RNA id: TU162647


Basic Information

Item Value
RNA id TU162647
length 783
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G120848
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37088094 ~ 37088876 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgactattattgccactgttcatcacacccccaaccggcaccgtcagacaccgcctaccaagagcctgggtctgccccaggtttcttcctgacaGGGAGTTCctcgcactgaatgcttgctcttgagggaattactggaattgttgggtctttgtaaattatagagtgtggtctagacctactctatctttaaagtgtcctgagataactcttgttaggatttgatactatatataaattgaatttaattgaattgtttagactccgctacattcaggaagtgtcttcttttaagagcagatacaatacaAAGGGGAGTTCATTTATagctgactgcttgaatttgttgatgaaaaccatgtgtaatATATACCTACTTCAGACAAACTgttaagcctggttcacacgggacgattttaaaattgtcggccgattttccaatcctgagagaccccacacacggtgataaaaaatcacgggtctaacagttttggtcgtacagtgtgtggtgcgcagcacacggcaaaatcaacatatcacacacgaaccgatttgactcccgagcattcccaggtcagacgggaaatctcgcaaaatccctcgagatcaaacgtgacttcagagtaaacaatcattgcagacgaagaggatgcagtggcgatagtttgtagtgtgtttttaaccgaaaagaaacgttatcaaaagaaaaggcgatggtcaaagaagacaacgcgagcatggactatactcagctacatcatgatatgaaggtgatttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162645 lncRNA downstream 8563 37079302 ~ 37079531 (-) True G120846
TU162644 lncRNA downstream 27248 37060647 ~ 37060846 (-) True G120845
XR_005640685.1 lncRNA downstream 217886 36869098 ~ 36870208 (-) True LOC120568215
TU162585 lncRNA downstream 268673 36819198 ~ 36819421 (-) True G120795
XR_005640748.1 lncRNA downstream 284453 36803072 ~ 36803641 (-) True LOC120568685
TU162665 lncRNA upstream 62673 37151549 ~ 37151884 (-) True G120865
TU162708 lncRNA upstream 174440 37263316 ~ 37293476 (-) False LOC120567715
TU162759 lncRNA upstream 206078 37294954 ~ 37296912 (-) True G120936
TU162823 lncRNA upstream 917943 38006819 ~ 38007058 (-) True G120990
TU162821 lncRNA upstream 922928 38011804 ~ 38019060 (-) True G120988
XM_039814683.1 mRNA downstream 350958 36710109 ~ 36737136 (-) False LOC120567714
XM_039814558.1 mRNA downstream 527447 36501801 ~ 36560647 (-) True LOC120567636
XM_039814680.1 mRNA downstream 606774 36465612 ~ 36481320 (-) True LOC120567712
XM_039816408.1 mRNA downstream 742568 36143287 ~ 36345526 (-) True LOC120568723
XM_039814679.1 mRNA downstream 1124040 35962591 ~ 35964054 (-) True LOC120567710
XM_039816267.1 mRNA upstream 75972 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA upstream 75972 37164848 ~ 37204970 (-) True LOC120568634
XM_039814684.1 mRNA upstream 157347 37246223 ~ 37288374 (-) True LOC120567715
XM_039815708.1 mRNA upstream 208228 37297104 ~ 37331410 (-) False LOC120568299
XM_039815707.1 mRNA upstream 211313 37300189 ~ 37331422 (-) True LOC120568299
unassigned_transcript_596 other downstream 26559 37061453 ~ 37061535 (-) True trnal-uaa_18
unassigned_transcript_595 other downstream 32094 37055918 ~ 37056000 (-) True trnal-caa_10
unassigned_transcript_594 other downstream 33383 37054629 ~ 37054711 (-) True trnal-uaa_17
unassigned_transcript_593 other downstream 37024 37050988 ~ 37051070 (-) True trnal-uaa_16
unassigned_transcript_592 other downstream 39992 37048020 ~ 37048102 (-) True trnal-uaa_15
TU162701 other upstream 139059 37227935 ~ 37233477 (-) True G120891
TU162801 other upstream 535065 37623941 ~ 37667980 (-) False LOC120567663
TU162876 other upstream 1345840 38434716 ~ 38435172 (-) True G121035
TU163045 other upstream 2287822 39376698 ~ 39376991 (-) True G121181

Expression Profile