RNA id: TU162670


Basic Information

Item Value
RNA id TU162670
length 394
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G120868
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37164848 ~ 37214610 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttTCATTTTGAAGAGAAAGTATTTATTGGAAACGGGCAATTTGTAGGACAAAATCAGACAAGTACACATCCTGAAATGTGAACTACATGAGGCAGGAAACCTAAACTCATCTGTAACAGCCCAAATGGTATTTGGAAGTGAAAACAGTAACCAGAAACATCAACACATAAGAAATTGTTCCCCTCTCCTCATGAGTCATATATGGTCCTTATTCATATTTAATTTCATGACATACCAGACTTGAACACTTTGTTCTCTGGTCTTTCAAGTTTAACAGTTAACTGTTCAAACGTATTCACACATCTGTTGTTTCCTGTTTCAggagaaagctgagtttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaactgagaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162660 lncRNA upstream 28098 37136359 ~ 37136750 (+) True G120860
TU162641 lncRNA upstream 73967 37089450 ~ 37090881 (+) True G120842
TU162630 lncRNA upstream 193410 36959931 ~ 36971438 (+) False LOC120568208
XR_005640684.1 lncRNA upstream 289454 36871351 ~ 36875394 (+) True LOC120568213
XR_005640683.1 lncRNA upstream 298708 36863799 ~ 36866140 (+) True LOC120568212
TU162681 lncRNA downstream 31628 37246238 ~ 37247868 (+) True G120875
TU162725 lncRNA downstream 80298 37294908 ~ 37297045 (+) True G120910
TU162729 lncRNA downstream 90284 37304894 ~ 37306014 (+) False G120914
TU162740 lncRNA downstream 124492 37339102 ~ 37342839 (+) True G120922
TU162741 lncRNA downstream 124492 37339102 ~ 37413196 (+) False G120922
XM_039815567.1 mRNA upstream 77405 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 309005 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 320198 36844011 ~ 36844650 (+) True LOC120568209
XM_039816078.1 mRNA upstream 417180 36737148 ~ 36747668 (+) True LOC120568506
XM_039816077.1 mRNA upstream 454036 36687706 ~ 36710812 (+) False LOC120568504
XM_039814685.1 mRNA downstream 383204 37597814 ~ 37598425 (+) True LOC120567716
XM_039815841.1 mRNA downstream 774955 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA downstream 797156 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 824471 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 824471 38039081 ~ 38098246 (+) False LOC120569077
TU162632 other upstream 146058 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 758159 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 759075 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 915321 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 922244 36242522 ~ 36242604 (+) True trnal-uaa_9
TU162730 other downstream 88284 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 797267 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 982431 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1541074 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 2177362 39391972 ~ 39392776 (+) True G121171

Expression Profile