RNA id: TU162681


Basic Information

Item Value
RNA id TU162681
length 1360
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G120875
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37246238 ~ 37247868 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCCtggatttttatttcattttgtgacAATTCAAGAGGATTCTTAGAGGGGTGTGTGTATAGGgtctacaaaaacaaaaactcatGAATTAACTGGGCCACTGGAATGGGCATTGAGATTGTGGtacagacaaagaaaaactACAAGTAGCCTTGTTCAGTACCAAACTCTTCACAGAAGAGagcaatttttctttttttttttaatatagttttttttttaattgttttttcccAAATGAAGGCACCCGATAACTTGTGGTTCATGGCCTTTCAGCCTTCTGGAGAGTTTTTAAAAGTAgagaaaaacgtttttcttctttgttttcaattaATACATgtcttctttatttttattttttaaatgtagaagCTGGAATGATAATAAATGTCAGatactgcttttgttttttacacCCTTCCCTTataggattttatttttagatcAACAAGTAACAAAAGAATGTTTTTTGTGAGGAGAATTAAAAAGTgggagatacaaaaatatttattttgaaaaatgataAGGGGAGGTGGGGGAATAATCCtttaaagaaaaagtaaataagACCACCTGGTGCGAACCAGAGGCCAAAAATCATACAAAAGCAGCATCAATCAACAGACAAATTATATAGTGCTTAGATAAGTCAGAAGCAGCAAAGTCTTCTGGGAAAGAGTCATCATCCCCATTGTTTTGTTACTTGTCTCAGGAATATTATATGTATGGAAGAGTTTTGTGGAAACTGACAAACTGATGCCTGACAAACTCCCACCCGTCTCCTCCTACTGCCCCGCGCCTCACTCTGGATGAATGCACGTCTCCGTGGATTCAACAGGACACATGGGAACATGGTGGAAGAACGCCTAACAAAAACGGGCTAGCTCCCGGCCATGTTCACAacatccccccaaaaaatgacgtttttttttttccattctaGCTAAACACGGACTACAGCACGGGGAACCGGTGACACGtacagtgttaaaaaaaattaaaaaacatgacCGAAAAAATAAAACCCTGTGTAAACACTGCACAATAAATAGATCAAACAGCAGGTTCCGCACCATGCATGTAATGACACAGTTTTCTGTGGTACAACTTTCACACCTCATACTCGCACCAGTTGCAGTTTgtccttttctctttttaatttgatttttttttcttttttttagtatcTCGAGTGCAAAACATCACAAATGAACAATTCTGTATTCAAGTAATGTTATATACatcaaaaaggaGTTTGAACGCTGGGGGCCGTGCTGCCGATGGGAGGCTACGTAACCTCCATGGCCACTGTGTTCTCTGATAGACTGTTCAGTGCTGGCTTGTCTTGTTCGTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162670 lncRNA upstream 31628 37164848 ~ 37214610 (+) True G120868
TU162676 lncRNA upstream 45655 37199955 ~ 37200583 (+) True G120872
TU162660 lncRNA upstream 109488 37136359 ~ 37136750 (+) True G120860
TU162641 lncRNA upstream 155357 37089450 ~ 37090881 (+) True G120842
TU162630 lncRNA upstream 274800 36959931 ~ 36971438 (+) False LOC120568208
TU162725 lncRNA downstream 47040 37294908 ~ 37297045 (+) True G120910
TU162729 lncRNA downstream 57026 37304894 ~ 37306014 (+) False G120914
TU162740 lncRNA downstream 91234 37339102 ~ 37342839 (+) True G120922
TU162741 lncRNA downstream 91234 37339102 ~ 37413196 (+) False G120922
XR_005640603.1 lncRNA downstream 637517 37885385 ~ 37891716 (+) True LOC120567664
XM_039815045.1 mRNA upstream 15527 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 158795 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 390395 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 401588 36844011 ~ 36844650 (+) True LOC120568209
XM_039816078.1 mRNA upstream 498570 36737148 ~ 36747668 (+) True LOC120568506
XM_039814685.1 mRNA downstream 349946 37597814 ~ 37598425 (+) True LOC120567716
XM_039815841.1 mRNA downstream 741697 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA downstream 763898 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 791213 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 791213 38039081 ~ 38098246 (+) False LOC120569077
TU162632 other upstream 227448 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 839549 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 840465 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 996711 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 1003634 36242522 ~ 36242604 (+) True trnal-uaa_9
TU162730 other downstream 55026 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 764009 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 949173 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1507816 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 2144104 39391972 ~ 39392776 (+) True G121171

Expression Profile