RNA id: TU162730


Basic Information

Item Value
RNA id TU162730
length 1008
RNA type TUCP
GC content 0.51
exon number 3
gene id G120914
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37302894 ~ 37306014 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctaatcatctcagcgtgacttgtaaccgttatattgtcggctagtttactttagaatcaaacatcagattttataaactacatgtgttttgtgtgcagaaatcttaatgtgtaaagtaactagtaactaaagctgtaacagatgaatatagtggagtaaaaagcacaatatttctctctgagatgtagcaGAGGAGatgtagaaagtggcatgaaaagaaaagactcaagtaaagtacctcaacatttggacttgagtacagtactggagtaaatgtacttagttacattccacccgTGTTCTACATACAGTTTAAGAGCtgaaaagtcagaaaatgaTTCCAGCTCAATTATTTCCCAGGTGCTCCGGCGCGACTGACTCACCGTGTCCCACTTGGCGTTCATCTTCTCCTTCTCGAACTTGGCGAACTCGCGGCGGTCATGGATGATCATGAGCAGCTTCCAGATGAGCAGCAGGGCGAGGCCAATCAGCACAATGCCTGCTACCACGCCCGCCACGATGGGGATGATGTCAGGTCCCGCTGGGCAATCCAGCTGCTCCATCACGTAGACCTCCTTGGTGTCGTTCCGGATGGCGTAGGTGTAGTAGAACCAGCAGTCGTTGGCGTCTCGCTCTTTGCAGTGAGTCAGGGGGAAGCTCTGGTCTGTAGGCTGGGGCAGGCTGTTGCGATCCTTCACCTTGATCAGCTGGAAGTAGCTGCAGTCCCTCTCACACGTGTCCTTCTTCTCACCGGCCTCGAACGCTCGGCACTGCACACAGTCTTTGTGCTCAGCGCAGACGCCAGGGCAGGTGGGACAGATCTCGCAGGTTGGACCCTGGAATTTGGGGTTGGTGCATTTGCAGAGGCCGCACTCACAGGTACCGCGGCCGTTACAGATCTGCCCGTTCTTGGCGAGGCAGGTGGCCGTCTCCAGGGAGCAGTCGCAGGCGCTGCCTGTGTAATTGGCATCACAGACGCACTTCCTGCACTCACAGCGCCCATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162725 lncRNA upstream 5849 37294908 ~ 37297045 (+) True G120910
TU162681 lncRNA upstream 55026 37246238 ~ 37247868 (+) True G120875
TU162670 lncRNA upstream 88284 37164848 ~ 37214610 (+) True G120868
TU162676 lncRNA upstream 102311 37199955 ~ 37200583 (+) True G120872
TU162660 lncRNA upstream 166144 37136359 ~ 37136750 (+) True G120860
TU162740 lncRNA downstream 33088 37339102 ~ 37342839 (+) True G120922
TU162741 lncRNA downstream 33088 37339102 ~ 37413196 (+) False G120922
XR_005640603.1 lncRNA downstream 579371 37885385 ~ 37891716 (+) True LOC120567664
TU162818 lncRNA downstream 697672 38003686 ~ 38003940 (+) True G120987
TU162826 lncRNA downstream 718981 38024995 ~ 38025205 (+) True G120993
XM_039815045.1 mRNA upstream 72183 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 215451 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 447051 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 458244 36844011 ~ 36844650 (+) True LOC120568209
XM_039816078.1 mRNA upstream 555226 36737148 ~ 36747668 (+) True LOC120568506
XM_039814685.1 mRNA downstream 291800 37597814 ~ 37598425 (+) True LOC120567716
XM_039815841.1 mRNA downstream 683551 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA downstream 705752 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 733067 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 733067 38039081 ~ 38098246 (+) False LOC120569077
TU162632 other upstream 284104 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 896205 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 897121 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 1053367 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 1060290 36242522 ~ 36242604 (+) True trnal-uaa_9
TU162816 other downstream 705863 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 891027 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1449670 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 2085958 39391972 ~ 39392776 (+) True G121171

Expression Profile