RNA id: TU162740


Basic Information

Item Value
RNA id TU162740
length 3610
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G120922
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37339102 ~ 37413196 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCAATGATCAGAGTCTGAGACAACAGAGACGGGTGAGTCTGGGTGCTGACCAGAAAGTCAAAGTACAGACAATACTTTTAGTCACTTAAGGCCTCACTGCTTTCccattcttttcttctttttttttttgacttctTATgtcctttctttgttttttctggATTTGAGACAGCAAAAAATTACAGAAGCAGtattgaaaggaaaaaaacatttcttcttgtcatacaaagaaaacaaataaaacaatggCACGCACATCAGTGACGGTACAAAAACAAGGTGATCTTATACCAAGCAAATAAAATTGTTACGTTTCAAAGAGACGCATATAAGCTTTTTTTCCAGAATGAAAAACATCTCTGAGAATGGTACTTTTCAGAATTCTAACATTGTTATCTGAAACCGTGTTAAAAAAGAAGCAACAATAACACTGTCCTCTCCTTCCTGCCTCCTCATGAATCAACATCATAAACacagattctttttttcttctttttgaatATATCAGTGCAACATTTGTTTTCACATCGAGTGCTGCGGCATCCTTTCTTGTTGGAAGGGGAAGGAGCTTTATTGAGACACAATCTGTTCAGACTGAAAGTATTATAGTTTGGATAGAATCTTGTCTGTGTCTTTCGCTGTAAACACACCGTATGTGGTTGATATTGTGAACCGGTGTGCTTCTAATAATGAACATCTCAAGAGCACCTTCATTTGATTGGAAATGTTTGTTAGTGCAACCGCACAGTGATTTCATTTAAACCGATTGAAAAGCCCCATCTTGAAGGAAAGAATTGAGAAACGATGAACGGTCTCTGTGTATTTTGAGCTCACACAATGCCAATTAATGCTACATTAAGAACTGGGCAGCTTGAGGTTCCACAGTGCAGCGCAGCAGGAACCACACTGAGAGGAACATTGCTCTCCCAGTGGCAACATGTCCAACTCTCACACCTGCCTAATGGCTTTTTAATCTACGGAGGCCTCCGTCAGCGTGGAGGAACATTCGGTAAGAACTGTCCCGTCTGTTGGCGGTTGTTAAAGGCTGACACCAGCGACTGCCTTCTAAGACTCAATCCTCCCACCGATACAGTGCTATGAACAAGTGACCAGTATCACAACACATTTAGCTACAAAAGCTAAAACACAACGCAGTATTATTAGGGCAATATTTATAAGGTTcattgtttttcagttttttaacacatttttttactgaaaaataCCCAGATTGAAAAAAGAACCAATTACTATAAACAGATTTTCATCATATGTCCTACTCCTCACAGACTGATCACTGTAGATTACAGTTCCATGAGGCCCCTTTGCAATATTGACagcacaatgaaataaaatgggGATGAAATGCAAATTAAACTGCTGCCGAAtctcacagaaaaaaacagtgcTTTCACTATAAAaattgactttaaaaaaaaatcaaattcatgattttttaaaatacaaaacaagaaCAGAAAATAATGAGCCCTATTGCTTTAGAGGCATTGCTGTTGGGTCTCCACTCTGATTAGCTCGTAAGCTCATCTTTGTTATGAAAAtgcgacgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgttatttccaGGCCACTTTAGCTCAAGAGAAATGGTTGTGGGGCAAGAATTGGACAGCTTTATAGCcacctgttgttttttttttttttaaacatcattTCGATCCTTCTCTGATAGTCGTCACAGGATAAAAACACTGACAGAGAGCACAGCATTGTCGTGGCAAACATTAGTTCTTAGTTTTTCAGTCAGGGTGGTAAGAATTAGCAGGGTCCGCCACATCCTGTCAGCCTCAATAAAAAGATGCTGAGGGCGGTCTTTCTGGCAGCTCCAGGGCTCAacagtctctctgtgtgccAGTGAGAAATGTTAGCTGCTAGCCATGAAAACATATTTCAATCCCATGAAGGATCCATCCTTGACTAGCTGTCAGCGTCCCACTGGTGCTGAGGTTGTCCGTTTTACCCTGTACAAAAACATGGCTTCCCATGAGGCATTTCTGAGGCATCCCTCCATAATCTCAAAGCCGTTTCCATGGTTGCAGAAACCTTTCTGTTCCCGGAGCACAAACGGAAACTAAacgacgacaacaacaacaacaacaaaaaaaatcacacaatgTGGAGCCAGATCACATTTGTAAAAGAAACACATACAACAGGTTTGTGTCTCTGCCTGTCAAAACGAATATTTATCTGTACATTTTAGAGATTAGGGCGAGTTTGATTCCAACATAGAAAGGATACTGCGGCACTAGTGTCTTTTTCTATAGAAAAAGGGTGCTCAAATATATTAAAAGCTATGTACAATATGTTGGATGTGTCATGTGCCATGAACATGAGGCATTCAGGGCTCCTACACATTTTCCATTCTGAAATCCCAtcgttttttttcccaaagcTTTCCAAAACCATAACTGCTTGACTTGGATATTAACATTTGAATGCGTGTCCTTATGACTCACGCCTCGTCATCGAGGCGACAAGATCTTCAGATCCACACCGACGCACCCGTATTTGACAGTATACTACTACAACACGACAATTTGGAGTTGGATAATCACACAACTGGCAAAGTTTCCGGACTTTTccctcacgtgtgtgtgtgtataggaaCCCTGGACGGACGGAACACCAGCCGATGGAAAAAACAACCAGCAGAAAAACAAGGCAACAGAAAAATTGGaggggggggaaaaagaaaaaggcactGTTGGAAGTGGACAACGGGTCACCATAGTACCcGActgaatgacacacacacacctgaaatgCAGATGTATATGAATGTGTCACATGTATACacgtagcacacacacacacacacacacacacacacacacacacacacacacacacacagccagctaaagagccagatatcaGAGTAGTAAATAATTCCACATACTCCGTTCTTTCTGTGAAACTATGacgtctgaaaaaaaaaaaaagaataaaacaaaatcataTCTCTCAATAAGTACACAAACGATACTTTCATCTGAATTGGTCTCAACACCAGCATGTGATTACATGAAATCAACGAAGCACGCTGAAACAAACAATTAGAATCATCTTAgttgtcttcttttcttttactgtaCAGATTCTTTATACACAGTGCCCCCCCTACAGGTCAGTCCCTTCCACTGCCGctcctgagaaaaaaaatgacattggcTCACTTTCAGCCCACCCTGCCGTCCCATTGGTGGCTTCAGCCACCCGTGTTCCTCCCACTTGATTGACTGCATCACGTGTCCACGCGGAGCAATCGCAGCTCCGTCCCTCTGCCCCCCCCTCACGCCTCCGAATAGTTAGTCTGTCCGTTCAGCTTGTCCTTCTTTAGCTTCACGCCATCCACCAGCTCAAAGTTATAGTTTTCCAGGGCAGATAAGTTCCTGTCCGTCATGCTGCCCTGCGAGCAGGCGCAGTATAGGACCACGCCGCAGATGGCGCCCAGGAAGACGCCCAGCGCCGACATGGCGATGATGGTGATGAGGATGGGGTCCAGGGTCTTCAGCATGTTGCCCGGGCCCCCGAGCTCGCTGGTCTCCTGCGAGAGGGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162729 lncRNA upstream 33088 37304894 ~ 37306014 (+) False G120914
TU162725 lncRNA upstream 42057 37294908 ~ 37297045 (+) True G120910
TU162681 lncRNA upstream 91234 37246238 ~ 37247868 (+) True G120875
TU162670 lncRNA upstream 124492 37164848 ~ 37214610 (+) True G120868
TU162676 lncRNA upstream 138519 37199955 ~ 37200583 (+) True G120872
XR_005640603.1 lncRNA downstream 542546 37885385 ~ 37891716 (+) True LOC120567664
TU162818 lncRNA downstream 660847 38003686 ~ 38003940 (+) True G120987
TU162826 lncRNA downstream 682156 38024995 ~ 38025205 (+) True G120993
TU162827 lncRNA downstream 684756 38027595 ~ 38042530 (+) True G120994
TU162828 lncRNA downstream 757305 38100144 ~ 38100905 (+) True G120995
XM_039815045.1 mRNA upstream 108391 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 251659 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 483259 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 494452 36844011 ~ 36844650 (+) True LOC120568209
XM_039816078.1 mRNA upstream 591434 36737148 ~ 36747668 (+) True LOC120568506
XM_039814685.1 mRNA downstream 254975 37597814 ~ 37598425 (+) True LOC120567716
XM_039815841.1 mRNA downstream 646726 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA downstream 668927 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 696242 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 696242 38039081 ~ 38098246 (+) False LOC120569077
TU162730 other upstream 33088 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 320312 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 932413 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 933329 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 1089575 36249445 ~ 36249527 (+) True trnal-caa_4
TU162816 other downstream 669038 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 854202 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1412845 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 2049133 39391972 ~ 39392776 (+) True G121171

Expression Profile