RNA id: XM_039814627.1


Basic Information

Item Value
RNA id XM_039814627.1
length 7654
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC120567663
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37623927 ~ 37975533 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agggattgGGAtcgagagagggaaggagggagagaggagctAAACAGGTggtctgaaaacacacagaaaacaatgtCGTCCGGCGGGGAGAAGCGGAAAGACCTCCAGTCCTCGCTTCTGTGAAGGAATACCGGCACAGCTGCGGAGCCGAACAAACACAAAACCCatgctccttttttattttcacgcggattcctcctcctcttctcggTTTTACTCCGAATCTGGGCAAGATCTCGGATACTAAACCATGAAAGTCACGGTGTGTTTTGGCAGGACCCGGGTGGTGGTGCCGTGCGGGGATGGAAATATTAAAGTCCACACACTGATCCAGCAGGCTGTCATGAGATATAAGAAGGCTATCGCCAAGGATGCCAGTTACTGGCTGCTGGTGCACCGGCTGGAGCACGGCGACGGCGGCATCCTCGACCTGGACGATGTTCTCTGTGACGTGGCCGACGACAAAGACAGGCTGATAGCAGTGTATGAGGAGCAGGAGCCCCACCACGGTGGAGATGGCACCAGCGCCAGCTCCACAGGGACCCAGAGCCCCGACCTGTTTGCTGCAGACCTCAGTGCTGGCAGTGGAGCCTCGGCCTTCCAGCCCTACCAGGCCGCCAGTGAGATCGAGGTCACGCCCTCGGCCCTGCGCACCAATATGCCCCTCCACGTGCGGCGCAGCAGCGATCCAGCCCTGCTGACCATCAACGGGCCGTTCAGCAGCGGCGAGTCACGGGTACAAACCGAAGAGCCACCATCGAGGAAGAACCCGACACGCTGGTCCACCACCGCCGGCTTCCTGAAAGTTCGCCACTCCTCTGGCACCAACAGCCTCGAGAGGAAGggTAAAGCTATGGACACGTACCGCAGTCTACCGCGGGATGCAGGGACATGGGCCAATCAGAGAGAGTTTCAGAGAGAGACGGCCCGCTCATCGCTCAGCGCCAATCACCCCATGGTGGACCGCTGGCTGGAGAGACAGGAGCAGGAGGACGAggccagagaagaagaaaacggCAGGATCGAGCCGGTTGGCCGGGCCGACTCGTGCATGGACCACAACCCTGTCAGGTCACTAGAAGCCCAGAACATGTTCCGCCAGGCCATGCGCTCTCCTGTCATCACGTTCCACGTGGTGCCGTCATCGATGAAGGGCAACTACGAACAGCTGTCCCACGCTGAGAGGAACCCGGCGTACGCCTCGGGTCGTTTCAGCCCAGACTCCCTGACTGGCAGCACCGTCTCTGGCGTGGACCACACCCCGCACAGGGTGTCCCGACACGGTTCCCAAACTCACCCGCACTCCCATCTGCACACTCAATCCCACGCTCACCCAGAGCAGACCGACGGCTACCCCCCTCTGGCTCACCCTGTGGTCTCTGCAGCCAAGCCGCCGACAGGCCACACGCCCTCGCCTCAGAGGGGGCTCAACGCCACGCCAACAGGAGGATTTACCAAGAAAGTTGGGAGGAGGCTCAACATCCAGCTAAAGAAAGGTCCCGAGGGACTCGGCTTCAGTATAACGTCCCGGGACGTTCCCATCGGCGGCTCGGCGCCCATCTATGTCAAGAACATTTTGCCTCGGGGAGCTGCCATCCAAGATGGCCGCCTCAAGGCGGGAGACAGATTGCTGGAGGTGAACGGAGTGGACCTGAACGGGCGCACCCAGGAGGAGGTGGTGTCTCTGCTCAGGGCCACGCCCATGGGCGGTGCCGTGGGGCTGCTGGTTCTACGCCAGGAGGACACTTTCCTCCCCCGAGACGTGAATGCTGAGCCCCAGATGCAAAGCCCCAGAGATGTGCATCCAAGGCAGCCCGTGACAGCCGGGAAACCCCATTGGCTGATTGAGAAGAGCGAGGAGGACGAGTTGGTCCTGACTCCAGACGGGACCAGAGAGTTCCTGACCTTTGAGATCCCCCTCAGCGACTCCGGTTCAGCTGGGTTGGGTGTCAGCGTTAAAGGCAATCGCTCAAAGGAGAACCACGCTGACCTGGGCATTTTCGTCAAATCCATCATTAATGGAGGGGCAGCCTGCAAGGACGGGCGGCTTCGAGTGAATGACCAGTTGATTGCTGTGAATGGGGAGTCGCTATTGGGCAAAACCAACCAGGACGCCATGGAGACGCTACGCAAGTCCATGTCAACGGAAGGCAACAAACGCGGGATGATTCAGCTCATTGTGGCCAGACGAGTGGCCAAAAGAAATGAGGGGAGCCCAGGGAGCCCGTTGGGGGGCAGCCAGCAGACCATGAACGCCTCCTTGGATGACCACGAGCGCCGGATCTCCCACTCTTTGTACGGTGGCCTGGAGGGCCTTGATGACAACTTGATACCACGACAGGGCATGATGCCACGCACAATAGGAAACTATCAGCTCTCGCCGACTGTCAACATGCCGCAGGACGACACGGTGATCATAGAGGACGACGGGCCGCCGCTCCTCCCTCCCAACCTCTCCGACCAATCGTCGTCCAGCTCCCACGACGATGTGGGCTTCACCGCTGACATGACGCCGCCCTGGGCCAAAGAGCTGCCCCCTCAGAAGGACAGCTCCCTGAATCCAGATGAAAATAATCCAGACGGCAACTTCCAAAGGGAAGGCTTTGGGCGCCAGAGCATGTCGGAGAAACGCACCAAGCAGTTTGGAGACGCCTCTCAGCTGGAGATCATCAAGACACGCAAGTCCAAGAGCATGGATCTAGTAGCCGACGAGATTAACCTCACCCCTCGTCCAGACACCAACACAGGTTCTTCCACAAAAGATGTGGGACCATCACTAGGCTTAAAGAAGTCCAGCTCTCTCGAGAGCCTCCAGACGGCAGTTGCCGAGGTAACCCTCAACGGGGACCTCCCCTTCCACCGGCCGCGCCCCCGTATCATCCGGGGGCGGGGCTGCAATGAGAGCTTCCGAGCAGCCATCGACAAGTCCTACGACCGACCCGCTGCAACGGAAGAAGACGATGAGGGCATGGAGACATtggaggaggacacggaggagaGTTCCCGATCAGGGAGAGACTCTGTGTCCACGGTGGCCGACCAGACCCCGCTGTCCGCCAACGAGAAACCCCTGGTCAACGGCACCAATCGCAccaaagaggagaagaaaaaagacaaagacaagggagggaaggagaagaagaagccggagggagggaaggagaaagACAAGGGAAAAGCCAAGAAGGGCATGCTGAAAGGACTCGGGGACATGTTCAGGTTTGGGAAGCACCGTAAAGACGAGCGGCCGGGAGAGAAGCTGGATCGTAAAGGCTCCAGCAAGTGGAGGGTGGATGAGACGCAGGTTTCAGACGAGGagatgatgaagatgaggaTGGAGCAGGAGAGGATCCAGGCCAAGACCAGGGAGCTGAGGGAGCGCCAGGCCAGGGAACGGGACTACGCCGAAATCCTGGACATAAGCCGCACACCTGAGAGGGGCTCAGAAGAGGAGCACCCGTACGCAGGCATCAACCCCTTGAACAGCTCTGTGGACAGCGGACACAGCCGGCCCCACAGCCCCCGGGATGATTACCCCCACTTCCATCCACACCACCAGCACCAGCACTCCGATTCCCACTACACCCAAGTCAGCAAAGCCCGCAACGACCGGCCGCCTTCTGCAGACAGTAACCGGCTAGCCCCTAGCAACCACGACCGGATACAGAGGCTGCGGCAGGAGTTCCAGCAGGCCCAGACCGTCCCGGACGACCCCGACGACCGCAGGAGGACCTACAGCTTTGAGCAGCCCTGGTCAAACGCCAGCAGCAACGGTCAGAGCGGGTACAGCCAGCCGGGTCGCCACTCGGTGTCGGTCGAGGTTCAGATGCAGCGgcagagacaggaggagagagactcGTTCGCCCAGGCACAGCGACAGTACAGCTCCCTACCACGGCAACCCAGAAAGAACCCCAGCTCCATCTCCCAGGACGTGTGGGAGAAAGCATCCCCGCCCGGCGAAGGCTTCCAGACGGCAAAGGACAACCCCAGGTACTCCAGCTACCAGGGCTCCAGGAACGGCTACCCGGGCGGTGGCGGGGGGGTCAACGCCAGAGTCCTTCTGGAGGCCCAGGAGCTCCTGAGGCAGGAGCAGAGGCGGCGAGAGCAGGAAGCCAAAGGGAAGCTAATGCAGGAGAGCAGCGGCTACGAGGGGTACCCTAGAGCGCACCTGAAGGACCCAGCCTCCCCCAAGGGTCCTTACCGCCATGATGTGCCACCTTCGCCCTCGCAGTTAGCAAGGCTTAATAGAATTGGGTCCGAGAAAGGAAGACTTTTTTATTCTTGAGGAGTATTGTTGGACTGATGGATGAAGAGCTGAACAGAGAACTTGTGCTTCGAAAGGGGGATTACCTTGAAGAAACAAAAAGTTGGACGCTACAAATCTTGACAAAGGGGCAACCTAGAGGACTTATAGCTTAGCGATGATCCTAGAGGTAACCAGATGTGAAGTGTACTCAGTATGtgggtctttttttttcaactcctCGCTGTGCCGATGACCTATACCAGTCCGTCAGTCAGTCACCCTCCTACAGATATGAGACGCTCAGTGCCTTCTCTGCACTCACCAACACGATGCTTGTTCACAGTCGTCCAGGACTCTGATTCATCGAGATCTGGCACCGGCATGTGCTGACAATCAAATGGGCAGACAGGCAAGTCAGTGGGCCTTCTTTAGAACCCATGGGGAGGCGTAAGTttctgtgtgggtttgtgtgtgggcATGTGACAAGGTTGCATGTTTCACAATCAAGTACACGTGTCGTGGCATCACAACGTGTCCCGTGTATGACTGGTCCCATCAGTCACAAATCACCCTTTCTTCACTTCGCTAAAGTTAACATTCAACCCCATACCGGCACTGCCGGCGTTTCTCTGCATTCTGTTTTCTCTACTTTCAGTCTTTTCTCCTCAGCGATCAAGCTCTTTCACTAGAGTACTCCCCGGGGAGAAGGAAAAAACAAGGCAAAGTGTATGAAAGAAGCAGGGCACACTGTGTgtgttattaataaaaaaagccccccccccttaTAAATGATTCATATCGTGTGTTATCTCAATGGAGGTGACCCAGGCAGAGAGGGTAGACAGCTCTGATCCTCTGCCTGGCTCCCCTGCACCGCTCTGGGCTTGACTCGCTGGCCCGCCTGGCTGACTATCTGGAGCTCTGGCTCCTCTCCTTCTCGACACCTCTCTGTTCATTACCTTTCTTTCTTCTACCTCAACACCCCCTACCTTTATCCTCCTCTCCGCTCCTCGCTCATCTCCCACCTTCCTCTCATCTCATCTCCCCGCCCCTCCCCCCTTACTCTTCCCCCTGCTACCCGCCACCACCCTCGTCCCCGTCTCCCGAGTCAGGCTCTGCACTGAATTTTTCATCACAAGCCACCTGCTGCCTGCCAGAGCCAAAGAACGCTGCCACCAGAGGAACCGACAGAGGGCCCGGCTTCTGACATAAAGAGAGGAATGAAAGCAACGACAAAAAAGAGGCAGAATAAAGATGGGTGGCTAGACAATAAGCCTGCCAGTGTGAGATTAGCAGGTGCTTTTCTCCTGTTTAACAAAAGGCAAAATTGTCCTCAGGAGTTAAttgctttttgtattttttaccttttcaaGCATTTGGCAGACACGCTTCTCCAAAATTTATAGAAATGTTCCTTAGAACTGCTTATttccacacacaaaaatagaTTGTATGATGTATTGTCTGTGAATTATCCAGAGTAGAGCCTGGTCAGGGGTGTAGCACAAAGTTCTAGACCCCATAGGCATTCTCTGTGGGCTCCTCCCCATATCCACAgctatatttattcatttgtggggccctcctcacatgaggaccgTGTATACTCAATCCCCCCCAGTCCGATGCCCCTGGGCCTGGTCACCATAGAAAGTGGCACTGCAACGTTCATCTTACTAACAACATTACTGACATATCCGCAGGGCCAGAACAATGCTAGCGGTAGTCAGTCGCAATCATGATCACAATGGCTCTCCgagttagctagcttgctaactgcCAGTTAGTGGACTTTTTGCATCAGTAACGGCACAGTAGGTTCACACCGTTTATTCAAAAGACGTATTTGGACCATTGACTCCTGTCTTATAGCTGTGCGTCTTTAGGGATGtagttgatactacaacaaagGGAGACTTGTATAAAAGCAGACAGTGCGACTCAACTAGTTAGCTAAAATAGCTTCCTCCATTTTGGAGAATTTGCTTGGCAAAAGGTGAacttttttcaaatgctgtgAAGACCACGCATGCAATTTAATTTACCTCCACTGTATTAGAGTGGAGACAGAAATCTCAAAACCTGGACAAATTAAACCCAGACTATCTATATATGTTCTTGTAATTTCTGTAAACCGACCCTTCAAGCAAGTTAAGGTTTAAACATGAATGATGCTTACCCAGTGGATTGTGGTAGTCATAGGTCGGAAAGAATACCTTGGGCATTGATGACACATGCATAAAAATCACAGCCCACCACTATAATTGCTGCAGTAGGTGGCAACGGCTTCTCTCAGTCTGAACCTTCCCCTCTTTGACATCACTAATGTTTACGACACGACTGTCTCCGCCTACAAGTGAACAAATGAGACCGAGCTGAGGTCGAATTTCAAACAAAAGGGAAATACGAAATAATAAAACGTGGCCATCATCgagctggggaaaaaaaacatgcgcTGCGTGATTGCCCTTCACTCCTACACACCTAATATGCAGAGGGAAGCTGCATGACATACATTATCTCCTGTTGGTTAATGAAGGCCCTCGCTGGGAAAGCTACAGGCTTAGTAGGGGTAATAAATGAACGCAAAAgtaagaagatgaagaagaaaggACTTTTAATGGCATTATTCCAGAGTATAACCCTGTATTTTAACCTGAGGAATGTTCACAATACTACATTGTTTTAAGCTAAAATGTCCCGTCTGCATTATGTATGTACTTTTGTGTATGACACAAACGCACTCACGTATGGCCCCTTGCCAGTGTGTTTTTAAATCCACGCTATGGGGCTGATGAAAACTGTTAGCAAATAAGATACCAACTGTGCAGGTGAGGGTAAAATATATCTCCACTCTGAATGGTTTCCAGTAAAAAGTGTTTGGTTGTAGCGGCCGGGCACTTTCTGCTGTGAACGCTACGCTTCTCAAAAATGCAGAGTAGCACGATAAGAAGGATGTATTTGACCTGTGTTCTTAACGTTGTAGACTTTGGGGTCTGATATCGATAAGTGCCTGTTATTATATCACAATGTTTTACACAAAGAGGGACACGATGTGATTTGTTTCAATGACACTACggtgtgtttttaaaaatttgTAATGTCATATTAAGATGTGTCATTTTTTGGGTACTCCTTcctgaaggtttttttttatttttatttacaagAGCCAACACTTGACGAGCGGTTATCAGTGTTTTTATATCCCGTTTGACATTGCCTTCAACCATGCTGTACCATGATGTGTTTTAAAGTATAAAAAGCAATGGAAGCTGATGtgcaattgtttttttgtttgtttttgtttccagaAAACTTTTACATGATATATTGAGAAATGTATACAGACACTTTTCCTGTACATATCAAATTTAGAATAAAATGAACGGCTGTTCCATCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162759 lncRNA downstream 327015 37294954 ~ 37296912 (-) True G120936
TU162708 lncRNA downstream 330451 37263316 ~ 37293476 (-) False LOC120567715
TU162665 lncRNA downstream 472043 37151549 ~ 37151884 (-) True G120865
TU162647 lncRNA downstream 535051 37088094 ~ 37088876 (-) True G120848
TU162645 lncRNA downstream 544396 37079302 ~ 37079531 (-) True G120846
TU162823 lncRNA upstream 31286 38006819 ~ 38007058 (-) True G120990
TU162821 lncRNA upstream 36271 38011804 ~ 38019060 (-) True G120988
TU162858 lncRNA upstream 129364 38104897 ~ 38105100 (-) True G121018
TU162862 lncRNA upstream 163452 38138985 ~ 38139436 (-) True G121022
TU162868 lncRNA upstream 284825 38260358 ~ 38260690 (-) True G121028
XM_039815635.1 mRNA downstream 181166 37339059 ~ 37442761 (-) False LOC120568250
XM_039815634.1 mRNA downstream 181167 37339059 ~ 37442760 (-) True LOC120568250
XM_039815707.1 mRNA downstream 292505 37300189 ~ 37331422 (-) True LOC120568299
XM_039815708.1 mRNA downstream 292517 37297104 ~ 37331410 (-) False LOC120568299
XM_039814684.1 mRNA downstream 335553 37246223 ~ 37288374 (-) True LOC120567715
XM_039814517.1 mRNA upstream 155378 38130911 ~ 38133834 (-) True LOC120567608
XM_039814945.1 mRNA upstream 868498 38844031 ~ 38884285 (-) True LOC120567865
XM_039814947.1 mRNA upstream 868498 38844031 ~ 38884285 (-) False LOC120567865
XM_039814948.1 mRNA upstream 868498 38844031 ~ 38884285 (-) False LOC120567865
XM_039814946.1 mRNA upstream 869379 38844912 ~ 38884285 (-) False LOC120567865
TU162701 other downstream 390450 37227935 ~ 37233477 (-) True G120891
unassigned_transcript_596 other downstream 562392 37061453 ~ 37061535 (-) True trnal-uaa_18
unassigned_transcript_595 other downstream 567927 37055918 ~ 37056000 (-) True trnal-caa_10
unassigned_transcript_594 other downstream 569216 37054629 ~ 37054711 (-) True trnal-uaa_17
unassigned_transcript_593 other downstream 572857 37050988 ~ 37051070 (-) True trnal-uaa_16
TU162876 other upstream 459183 38434716 ~ 38435172 (-) True G121035
TU163045 other upstream 1401165 39376698 ~ 39376991 (-) True G121181

Expression Profile