RNA id: XM_039815840.1


Basic Information

Item Value
RNA id XM_039815840.1
length 2213
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120568367
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37989565 ~ 38019068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGGGTGTTTTACTGACTTCAGCGGGGCAGGAGTGATGTCATTGTGATGTCAATGCCTGTAATTGTAATCGGGCTGCAAAGTTCACAAGTTGACCACTCGGTTGCATAGAGAGCTGAGAGGGAAAAGGGAGAAGGAGACGGAGAGGTTGTAGTGAAGCGAGAAGGAATCCGAGCAGACGAGTGTTTCTGTGCTGGGGTGTTTTGCTGCCGCGGTGCTGGATTATTGGAAACAAGAGATGGCTGTGACTGGGGATGAGACGGAGTCAGCTGCCACAGGAGACATCCCAGCCTACCAGCTGCGTTCGCCCAACTCGGGCCTGGCTCACAGCATTGTGATGGCTGCGTCCCCGGGCACCATGCAGAACCCTCAGCCCCAGCACACCGAAGACATCACCCGCAAGAGGGAGGTCCGACTGATGAAAAACAGGGAGGCAGCCCGCGAGTGTCgcaggaaaaagaaagagtACGTCAAATGTCTGGAGAACCGCGTGGCTGTgctggaaaaccaaaacaagaCCCTGATTGAAGAGCTGAAAGCACTGAAGGACATTTACTGCCACAAAGCCTAGCAGCGGCGGCCGTTTGTGGTCACGAGCCGAAGACAACCGTTTACAAACTGCTACAGCAAatccaagaaaaaaaactaaaaagactCTGCTTTGACCGTCTTTGTGTCTGCTCACTCAGGCCTGGTTTACGCTGAGTTCAGAAGTGTCCGGGGGAATTGGAACAGCTTGAGCTTGCCAGTTTCGCTCTTGTTCTCACCTTCCGTTCTGCGTGCACAATGTGCTTGCTGTTGCTTTTGTGCGCGGGGCGAAGCCAGCCAATGACAGCCAGCTGAAGAAGAGGAacaggaagaaaggaaaaacagGTGCTTCCTGAAAATGTACCGCTCGAGCCAGATTACagattctgaaaaaaaaaaaaaaatgaaaaggccTCGTTTGGTCAGCCAGGTCTCCCTCCCAGCCAGTCTGTCTGAGGTCAGACACTGATCCAACACCAGCTGCAACCAGGCAACTCAACCTAATGTACTCGGTAATGTCATCAGCGTCGTTTAAGCTTCTGTTTTTGGGTCGTTTTCATGCATTCCTTCATGTGAAAAATGCGGAATATCTTCAGGCATTTCTGTCATTGTAGGGATTACCTGGATTTCATCAACTTGTTTTCAGTTTGTAAGGAAGTTCTTGATTTGGtcaaaaaggatttttttttcaaaaagaaaaattcaaGCTTGAATTCAAGATGAAAATCCTCTTATGTTTGGCAGTTTGTGCACAGAACTGCGACATATATGTCAAGCCAATGCTATCTGAGTCAGAACTTGGTTAGCAAGTTATTTTTCATCACTAAAGTGAGATGATTGTTGTATTTGAAATGACAGAGCACAATTGCTCTTTAGTCAATGCACAGAAAGTACCATGTGGATATTATGAGGATGTATATTCTATTACATGTATTTGAGGAATTTCACTCCACAGGTTTATATTATCTTCTACAAAGCAAATGTTTAACCTTTTAACGTGTTGtgaaacatgtttaaaaacaaatttaaatgaAATTGTCTATTCTATAACGAAAACCCAACTTTTGTAAACCAACAATCTTAAAATGACTCATAACTGAAAGAATAAGTGCTGCGCTTCAACGTCACGCAAGTCTTGTTGTTGGAATGATGGAGATCATTGTGGTAGAAAACTGTATTTACATGATTATGGCTAGATATTAAAATGCTCTGTTTCAAGGGTGATGCcaattttttgactttttatttgaATGATAATAAATCATCTTGTGTTAATGTTTCTGGTGATTGTGATCTCCTGTCTCTAGTTGTTTTATTGAAAGGATAGAAAGAGCACCGACAGATCTCTTATGACCTATATTTAAGTATCAGTTACGGTATTGGAACTAGTGTTCAGCTCCGAGACAACCGAATGGCTGGCAGTCAGCCAACCAGATGAGCCGTCATGGCTTGTATTCACAGAGGACTAGCCGTCCTGTTGGAGtctatcataaaaaaaaacaggtaatAATACAAGTCAGCATTTCTTTGATATCAACTGAGTTGAATTTCTCtgcatgtattttttatttatttttgctgtaTCAATCTATATTTTCCCAGGTGGTCTCCTCCTAGTGTACTTTCTTGTGTGAATTGTAAAACCCAAACTATTTTTGTTTCTCTAATAAAACATTCAAACGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162818 lncRNA upstream 7826 38003686 ~ 38003940 (+) True G120987
XR_005640603.1 lncRNA upstream 120050 37885385 ~ 37891716 (+) True LOC120567664
TU162741 lncRNA upstream 598570 37339102 ~ 37413196 (+) False G120922
TU162740 lncRNA upstream 668927 37339102 ~ 37342839 (+) True G120922
TU162729 lncRNA upstream 705752 37304894 ~ 37306014 (+) False G120914
TU162826 lncRNA downstream 5927 38024995 ~ 38025205 (+) True G120993
TU162827 lncRNA downstream 8527 38027595 ~ 38042530 (+) True G120994
TU162828 lncRNA downstream 81076 38100144 ~ 38100905 (+) True G120995
TU162830 lncRNA downstream 81116 38100184 ~ 38100905 (+) False G120995
TU162863 lncRNA downstream 137285 38156353 ~ 38156690 (+) True G121023
XM_039814685.1 mRNA upstream 413341 37597814 ~ 37598425 (+) True LOC120567716
XM_039815045.1 mRNA upstream 781055 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 924323 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 1155923 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 1167116 36844011 ~ 36844650 (+) True LOC120568209
XM_039816922.1 mRNA downstream 20013 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 20013 38039081 ~ 38098246 (+) False LOC120569077
XM_039814686.1 mRNA downstream 83509 38102577 ~ 38103710 (+) True LOC120567717
XM_039816328.1 mRNA downstream 601268 38620336 ~ 38628410 (+) True LOC120568674
XM_039814943.1 mRNA downstream 799979 38819047 ~ 38843071 (+) True pitrm1
TU162730 other upstream 705752 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 992976 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 1605077 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 1605993 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 1762239 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_597 other downstream 177973 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 736616 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 1372904 39391972 ~ 39392776 (+) True G121171

Expression Profile