RNA id: TU162818


Basic Information

Item Value
RNA id TU162818
length 255
lncRNA type intronic
GC content 0.50
exon number 1
gene id G120987
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38003686 ~ 38003940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccagacattactccacagcccagcggagtagctaacgttagatgctagtctcacatagccagacattactccacagcacagcggagtagctaacgttagatgctagtctcacatagccagacattactccacagcccagcggagtagctaacgttagatgctagtctcacatagccagacattactccacagcccagcggagtagctaacgttagatgctagtctcacatagccagacattactccacagcccAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640603.1 lncRNA upstream 111970 37885385 ~ 37891716 (+) True LOC120567664
TU162741 lncRNA upstream 590490 37339102 ~ 37413196 (+) False G120922
TU162740 lncRNA upstream 660847 37339102 ~ 37342839 (+) True G120922
TU162729 lncRNA upstream 697672 37304894 ~ 37306014 (+) False G120914
TU162725 lncRNA upstream 706641 37294908 ~ 37297045 (+) True G120910
TU162826 lncRNA downstream 21055 38024995 ~ 38025205 (+) True G120993
TU162827 lncRNA downstream 23655 38027595 ~ 38042530 (+) True G120994
TU162828 lncRNA downstream 96204 38100144 ~ 38100905 (+) True G120995
TU162830 lncRNA downstream 96244 38100184 ~ 38100905 (+) False G120995
TU162863 lncRNA downstream 152413 38156353 ~ 38156690 (+) True G121023
XM_039814685.1 mRNA upstream 405261 37597814 ~ 37598425 (+) True LOC120567716
XM_039815045.1 mRNA upstream 772975 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 916243 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 1147843 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 1159036 36844011 ~ 36844650 (+) True LOC120568209
XM_039815840.1 mRNA downstream 7826 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 35141 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 35141 38039081 ~ 38098246 (+) False LOC120569077
XM_039814686.1 mRNA downstream 98637 38102577 ~ 38103710 (+) True LOC120567717
XM_039816328.1 mRNA downstream 616396 38620336 ~ 38628410 (+) True LOC120568674
TU162730 other upstream 697672 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 984896 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 1596997 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 1597913 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 1754159 36249445 ~ 36249527 (+) True trnal-caa_4
TU162816 other downstream 7937 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 193101 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 751744 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 1388032 39391972 ~ 39392776 (+) True G121171

Expression Profile