RNA id: TU162826


Basic Information

Item Value
RNA id TU162826
length 211
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G120993
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38024995 ~ 38025205 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCCGTTGCCTTTCAAATATCTCCATGGCCTTTGGTCCAGTGTGACCGGAGTGGAAATTTCCACCAAGAGACTAACCGCCTACAAGCAGTGAGATGAAGCCTACTGACTTGACAACACCAACAGTGCTTCACTGTGGCAATCGACAAGGCCCTCTGCTGTCCAACACACACTACTGCAACACAAAGCTCAATGCAAGTTCCCCTACTGCC

Function

GO: NA

KEGG:

id description
ko04217 Necroptosis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162818 lncRNA upstream 21055 38003686 ~ 38003940 (+) True G120987
XR_005640603.1 lncRNA upstream 133279 37885385 ~ 37891716 (+) True LOC120567664
TU162741 lncRNA upstream 611799 37339102 ~ 37413196 (+) False G120922
TU162740 lncRNA upstream 682156 37339102 ~ 37342839 (+) True G120922
TU162729 lncRNA upstream 718981 37304894 ~ 37306014 (+) False G120914
TU162827 lncRNA downstream 2390 38027595 ~ 38042530 (+) True G120994
TU162828 lncRNA downstream 74939 38100144 ~ 38100905 (+) True G120995
TU162830 lncRNA downstream 74979 38100184 ~ 38100905 (+) False G120995
TU162863 lncRNA downstream 131148 38156353 ~ 38156690 (+) True G121023
TU162864 lncRNA downstream 162770 38187975 ~ 38188247 (+) True G121024
XM_039815841.1 mRNA upstream 5927 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA upstream 5927 38011766 ~ 38019068 (+) False LOC120568367
XM_039814685.1 mRNA upstream 426570 37597814 ~ 37598425 (+) True LOC120567716
XM_039815045.1 mRNA upstream 794284 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 937552 36879918 ~ 37087443 (+) True LOC120568208
XM_039816922.1 mRNA downstream 13876 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 13876 38039081 ~ 38098246 (+) False LOC120569077
XM_039814686.1 mRNA downstream 77372 38102577 ~ 38103710 (+) True LOC120567717
XM_039816328.1 mRNA downstream 595131 38620336 ~ 38628410 (+) True LOC120568674
XM_039814943.1 mRNA downstream 793842 38819047 ~ 38843071 (+) True pitrm1
TU162816 other upstream 5957 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 718981 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1006205 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 1618306 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 1619222 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_597 other downstream 171836 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 730479 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 1366767 39391972 ~ 39392776 (+) True G121171

Expression Profile