RNA id: TU162863


Basic Information

Item Value
RNA id TU162863
length 338
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G121023
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38156353 ~ 38156690 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagcatttcctctacaacacaggcctactgcccgaccaacttcttcaactctcccccacttactggttttgcaccgatgtccagcttttgttgtttgggtggtggggggcctccttctctctgcttcccaccacctgctgggacttgctctgtaagtttgactgcagtgctgcgactccaaatgtttcttcaaatttgacgtagtgttttcgtagctagatagcactttgtcgccaccagcacagagtgtacaacggacctaaatattgccgtctttagctgacacaaactcaaaatagtgactgtatttccagctagaaagcgcgcatctctctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162828 lncRNA upstream 55448 38100144 ~ 38100905 (+) True G120995
TU162830 lncRNA upstream 55448 38100184 ~ 38100905 (+) False G120995
TU162827 lncRNA upstream 113823 38027595 ~ 38042530 (+) True G120994
TU162826 lncRNA upstream 131148 38024995 ~ 38025205 (+) True G120993
TU162818 lncRNA upstream 152413 38003686 ~ 38003940 (+) True G120987
TU162864 lncRNA downstream 31285 38187975 ~ 38188247 (+) True G121024
TU162873 lncRNA downstream 272971 38429661 ~ 38430105 (+) True G121032
TU162875 lncRNA downstream 278057 38434747 ~ 38435000 (+) True G121034
TU162882 lncRNA downstream 391736 38548426 ~ 38548626 (+) True G121041
TU162884 lncRNA downstream 392980 38549670 ~ 38550038 (+) True G121043
XM_039814686.1 mRNA upstream 52643 38102577 ~ 38103710 (+) True LOC120567717
XM_039816922.1 mRNA upstream 58107 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA upstream 58107 38039081 ~ 38098246 (+) False LOC120569077
XM_039815841.1 mRNA upstream 137285 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA upstream 137285 38011766 ~ 38019068 (+) False LOC120568367
XM_039816328.1 mRNA downstream 463646 38620336 ~ 38628410 (+) True LOC120568674
XM_039814943.1 mRNA downstream 662357 38819047 ~ 38843071 (+) True pitrm1
XM_039816250.1 mRNA downstream 1329440 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 1329440 39486130 ~ 39522470 (+) False frrs1a
XM_039816254.1 mRNA downstream 1329440 39486130 ~ 39522239 (+) False frrs1a
TU162816 other upstream 137315 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 850339 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1137563 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 1749664 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 1750580 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_597 other downstream 40351 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 598994 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 1235282 39391972 ~ 39392776 (+) True G121171

Expression Profile