RNA id: TU162882


Basic Information

Item Value
RNA id TU162882
length 201
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G121041
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38548426 ~ 38548626 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattacagtaattccctcaagagcaagcattagcagtggctattgcgacagtggcgaggaaaaactcccttttaggaagaaacctcggcagacccagactcttggtaggcggtgtctgacggggccggttgggggtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162875 lncRNA upstream 113426 38434747 ~ 38435000 (+) True G121034
TU162873 lncRNA upstream 118321 38429661 ~ 38430105 (+) True G121032
TU162864 lncRNA upstream 360179 38187975 ~ 38188247 (+) True G121024
TU162863 lncRNA upstream 391736 38156353 ~ 38156690 (+) True G121023
TU162828 lncRNA upstream 447521 38100144 ~ 38100905 (+) True G120995
TU162884 lncRNA downstream 1044 38549670 ~ 38550038 (+) True G121043
TU162896 lncRNA downstream 133084 38681710 ~ 38682252 (+) True G121053
TU162909 lncRNA downstream 307682 38856308 ~ 38860731 (+) True G121063
TU163050 lncRNA downstream 852769 39401395 ~ 39406398 (+) True G121185
XM_039814686.1 mRNA upstream 444716 38102577 ~ 38103710 (+) True LOC120567717
XM_039816922.1 mRNA upstream 450180 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA upstream 450180 38039081 ~ 38098246 (+) False LOC120569077
XM_039815841.1 mRNA upstream 529358 37989565 ~ 38019068 (+) True LOC120568367
XM_039816328.1 mRNA downstream 71710 38620336 ~ 38628410 (+) True LOC120568674
XM_039814943.1 mRNA downstream 270421 38819047 ~ 38843071 (+) True pitrm1
XM_039816250.1 mRNA downstream 937504 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 937504 39486130 ~ 39522470 (+) False frrs1a
XM_039816254.1 mRNA downstream 937504 39486130 ~ 39522239 (+) False frrs1a
unassigned_transcript_597 other upstream 351304 38197041 ~ 38197122 (+) True trnas-cga_7
TU162816 other upstream 529388 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 1242412 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1529636 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 2141737 36406121 ~ 36406689 (+) True G120717
TU162901 other downstream 207058 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 843346 39391972 ~ 39392776 (+) True G121171

Expression Profile