RNA id: TU162901


Basic Information

Item Value
RNA id TU162901
length 248
RNA type TUCP
GC content 0.50
exon number 1
gene id G121058
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38755684 ~ 38755931 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCATGGAGAAGAAACGCAAACGAGGTGCAGAGAAGCTGcgtgagaaaaagaaacaggCCCTTCAGGCAGACGCTGCCAAATGTGTCAAATTGACAGACATGTTTTCggcagtagcaggaccttcatcagctcccATGGCTGAtgatagtggtggtggtggtgtcggTGTCAGCGGCAGTggcatgcacagtgaggagtattatttcctgttgctggattcagtggttgaaatgactgcagagacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162896 lncRNA upstream 73432 38681710 ~ 38682252 (+) True G121053
TU162884 lncRNA upstream 205646 38549670 ~ 38550038 (+) True G121043
TU162882 lncRNA upstream 207058 38548426 ~ 38548626 (+) True G121041
TU162875 lncRNA upstream 320684 38434747 ~ 38435000 (+) True G121034
TU162873 lncRNA upstream 325579 38429661 ~ 38430105 (+) True G121032
TU162909 lncRNA downstream 100377 38856308 ~ 38860731 (+) True G121063
TU163050 lncRNA downstream 645464 39401395 ~ 39406398 (+) True G121185
XM_039816328.1 mRNA upstream 127274 38620336 ~ 38628410 (+) True LOC120568674
XM_039814686.1 mRNA upstream 651974 38102577 ~ 38103710 (+) True LOC120567717
XM_039816922.1 mRNA upstream 657438 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA upstream 657438 38039081 ~ 38098246 (+) False LOC120569077
XM_039815841.1 mRNA upstream 736616 37989565 ~ 38019068 (+) True LOC120568367
XM_039814943.1 mRNA downstream 63116 38819047 ~ 38843071 (+) True pitrm1
XM_039816250.1 mRNA downstream 730199 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 730199 39486130 ~ 39522470 (+) False frrs1a
XM_039816254.1 mRNA downstream 730199 39486130 ~ 39522239 (+) False frrs1a
XM_039816249.1 mRNA downstream 730199 39486130 ~ 39522238 (+) True frrs1a
unassigned_transcript_597 other upstream 558562 38197041 ~ 38197122 (+) True trnas-cga_7
TU162816 other upstream 736646 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 1449670 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1736894 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 2348995 36406121 ~ 36406689 (+) True G120717
TU163034 other downstream 636041 39391972 ~ 39392776 (+) True G121171

Expression Profile