RNA id: TU162909


Basic Information

Item Value
RNA id TU162909
length 1739
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G121063
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38856308 ~ 38860731 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTGTGCTGAACTATAATGTATGTAAATTGAAATTAACACTGTCTGGGTGTGTTCAGGAACATGTAGCGAAGAAATAAACATAAAGAGGGCGTTAGGTAGGTAGGACCTGTTGGTCAGAGATCAGAGACACCAATGGCGGGTGGGACGGACCAAAAGGTCTGGGAGGACTGTACTGGTGGGAGAAGCCAAGAGGAGAGAGCCAGGCCAATCACAAAGGACAGTGACGCACACAGAGGAAGTAGCtccacacacagaaagacagggagggagacaatGTTCATTTTCTGGCCAAGCTGCCCAAGTCAAAAAAGGCTGTATTTTGTTATAGTTATAGTTTAGACATTCAAAAATCATTATAATTAGTGAGGGAAGTTAATGAGGAATTTTTCCAGCCCAAAATGCAACTTGCACACTTAGTATTCAGTTTCACACTAGTTCACTCTACTGATAAATATAAACCCATCGTTTGGTTGACATCACCTTtatgatttagatttttaattCAATCATCAAAAGGCTTTGGATTCGCAGCTTGGCCTTAAAATAATAACCATATATGGACAGATATTGGAGAGCCTCTAACagttaaatgtgttttaaatgtattcTGAAAATATGGTTTTACAGAAGTTGGAGACATGTTTGCATAATGGAATCAGGTAAATGAGCCATGTtcaaaaacacaatacacagtGCATGTAACATACTGAAAAGAGAACGCTTATTAATGTTGTATAGCAGGTACAATAACGCTGACCAATGAAGATAATTCAAAGTTAACTTTTCAAATGAATCAAGAATTTCTGCTTTGATACAATTATTAGAACTATACAACAATcagaaaaactatttttaaagTTTAAGGAAATACTAATATTGGCACACACAagcttgtttttctttctttctgtgatAAGATAAAACATGTTCAGAAAGACACAATGTTGTGAAATCAAGATAAGACACTGCCATTATGCCCAAAAATCAGGTAAAGTTCCATACCTCAAATCCTCCGATGACCAGCAGGGCGTTGATGTTATGGATCTTAATCTGTTCGGCAATCTTATCCAGATGTTTGCCTGGAAGAGTTCGTTTTGTCCCTAGCAGTGAGCCTCCCTGGCCAGTCCAACCCCCGACATCTCCCCATTTGATCTCCTTGATATGTCCCTTGTAGAATCCCTCGAAGCCGTCGCTGACCGCCAACATTTTGTGGCCTTCAGTGATTCCCACTCTGACAGCAGAACGCACGGCGGCATTCATACCTGCTGCCGGGGCGCCGACGTTCAGCACCGCAACGTTAAAGGAGCTCTAGTGATGACACAGAGcagcagtcacacacacacacacacacacacacacacacagtacactcagaaatacacacaatgCAGAACGTAAAACCTGGCACTTGTAGACAGTATGGCCATATGTTTGGCCATATGTTTGGCCATAACACCCCcaagctttttcacattttaaaacGTCATCTTCACACCTCAGGCGTGAGTCTTACATTCACTGCACAATCACAGCAGGTATGAAGCTTGGGTGGAAGAAGAAGGTATACCAGCAACCGTTGGAGGCAATGAAGGCAGACAGGGATTTCTGTAGCAGACGTGAAGTAGGAACATTGGACAAAACTCACTGCAGGTGACTGTgcgttttctttttacttttatcacCACAGGATTATTTTGCATAATTTTGCTGCGTGTCTGACAGGACAGTTGTCCGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162896 lncRNA upstream 174056 38681710 ~ 38682252 (+) True G121053
TU162884 lncRNA upstream 306270 38549670 ~ 38550038 (+) True G121043
TU162882 lncRNA upstream 307682 38548426 ~ 38548626 (+) True G121041
TU162875 lncRNA upstream 421308 38434747 ~ 38435000 (+) True G121034
TU162873 lncRNA upstream 426203 38429661 ~ 38430105 (+) True G121032
TU163050 lncRNA downstream 540664 39401395 ~ 39406398 (+) True G121185
XM_039814943.1 mRNA upstream 13237 38819047 ~ 38843071 (+) True pitrm1
XM_039816328.1 mRNA upstream 227898 38620336 ~ 38628410 (+) True LOC120568674
XM_039814686.1 mRNA upstream 752598 38102577 ~ 38103710 (+) True LOC120567717
XM_039816922.1 mRNA upstream 758062 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA upstream 758062 38039081 ~ 38098246 (+) False LOC120569077
XM_039816250.1 mRNA downstream 625399 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 625399 39486130 ~ 39522470 (+) False frrs1a
XM_039816254.1 mRNA downstream 625399 39486130 ~ 39522239 (+) False frrs1a
XM_039816249.1 mRNA downstream 625399 39486130 ~ 39522238 (+) True frrs1a
XM_039816253.1 mRNA downstream 625399 39486130 ~ 39522238 (+) False frrs1a
TU162901 other upstream 100377 38755684 ~ 38755931 (+) True G121058
unassigned_transcript_597 other upstream 659186 38197041 ~ 38197122 (+) True trnas-cga_7
TU162816 other upstream 837270 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 1550294 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1837518 37010999 ~ 37018790 (+) False LOC120568208
TU163034 other downstream 531241 39391972 ~ 39392776 (+) True G121171

Expression Profile