RNA id: TU163050


Basic Information

Item Value
RNA id TU163050
length 616
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G121185
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 39401395 ~ 39406398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCTTCAGTAACAAAGTTTTAGATTTAATAAAGAAATATCATCCTCCACATATCTTTATGGAAATCTGCTTTTCCGATCAGAGGCATCTATTAATTACCTTTGTCTTCACCTGGGCTCAATAGGTATCTGTATTTCTCATATTTGTTGACTATAAGATTAAAACTGGAATGCTTCACTGCAGGTGCACTCCGGGAAGTTCGACCAGACCGACTTACCGGCAGGTTTCTGGCTGAATCCAGGAAGACAACAAGCACCGCAGACGACAGGCCGTCGTTGGCTTGACCACGATCGGCTTTGATGCTCATCAGTGCCTGGTCCAGCTTCTCAGGTGTGGACAGCAGAGATAACCACTCCAGTTTGAGGTGCAGCTTCCCTGTCGCCACTTCTTCCATCACAAACCACTCATCAACTTTTTGTTCCTTCTTGAGCTCGGCCATGTCGATCATCAGACTTCCCAGAAAGTCATCTTTATCAGTGTCTTCATCAAACAGCTCAATATCCAGATTCTGTCCTGAGTGATCGTACATCAAGGcCTCGTACACTTCATTCCATTTTGGGTTGACGGTATCGTTGATGACTTTGCTCTTGAAGAGTTGGGTCCCAACCCGGATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162909 lncRNA upstream 540664 38856308 ~ 38860731 (+) True G121063
TU162896 lncRNA upstream 719143 38681710 ~ 38682252 (+) True G121053
TU162884 lncRNA upstream 851357 38549670 ~ 38550038 (+) True G121043
TU162882 lncRNA upstream 852769 38548426 ~ 38548626 (+) True G121041
TU162875 lncRNA upstream 966395 38434747 ~ 38435000 (+) True G121034
XM_039814943.1 mRNA upstream 558324 38819047 ~ 38843071 (+) True pitrm1
XM_039816328.1 mRNA upstream 772985 38620336 ~ 38628410 (+) True LOC120568674
XM_039814686.1 mRNA upstream 1297685 38102577 ~ 38103710 (+) True LOC120567717
XM_039816922.1 mRNA upstream 1303149 38039081 ~ 38098246 (+) True LOC120569077
XM_039816250.1 mRNA downstream 79732 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 79732 39486130 ~ 39522470 (+) False frrs1a
XM_039816254.1 mRNA downstream 79732 39486130 ~ 39522239 (+) False frrs1a
XM_039816249.1 mRNA downstream 79732 39486130 ~ 39522238 (+) True frrs1a
XM_039816253.1 mRNA downstream 79732 39486130 ~ 39522238 (+) False frrs1a
TU163034 other upstream 8619 39391972 ~ 39392776 (+) True G121171
TU162901 other upstream 645464 38755684 ~ 38755931 (+) True G121058
unassigned_transcript_597 other upstream 1204273 38197041 ~ 38197122 (+) True trnas-cga_7
TU162816 other upstream 1382357 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 2095381 37302894 ~ 37306014 (+) True G120914

Expression Profile