RNA id: XM_039814499.1


Basic Information

Item Value
RNA id XM_039814499.1
length 3114
RNA type mRNA
GC content 0.59
exon number 20
gene id oc90
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4837464 ~ 4888212 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCTGCCCAGGAACCCAAAGCATGAGAATCTGCTGCTCGGGTGTCACCTAATCGCCAATAAAGGctaaagccccccccccctctcctctcctcctcagttGGACTGATAAACAGTTAGCGGAGCTCTGAGTTTATTCTTTCGGGGGAAAGAAGACTGCAGAGCACTAAAATAAAAAGGCTTCCACTCTCTCTATTGGCTGCTAGCCCCCCTCAGAGCCGCGTGGGGTCCCTTACGATGACTCAGCTTTTCACGCGTTTCTTTATTCAATGAAGAGGCCGTAAGTTCTGGTGCCGTCCAACCGCCACTAAGGTACGAGTCATGTTTGTGATATGGATTTTCACGCTATCTGCTCTTCCAAACGCGCTGTCTGCCGGCTCCATCTTCTGCCCGGACCCAGAGGCCGGCGACCAGATCACAGATTACATGACTGACTGCCTCGGCCCGCGCTTCACCTGGCTCCACTCGGTCTTCGATAATTTCCCCGCGCTGCTGGGCTTTGCTGTGAAGCTGCGCTGTGCGACGGGGCTTTGCCCGCGCGACCTGGAAGACTACGGCTGCTCCTGCAGATACGTGGCGGCTGGAAACCCCGCGGATCCTCTGGACACCTGCTGTGCGACTCACCGGCAGTGTTATCAGGACGCTGCCCCCTGCAGGCAGCCCCTGCCTCCCCTCCCCGACAACTTCACCTGTTCAACAGCAAACACCAGCTGTGACGCTGCTGATGGCTGTCAGCGGAGGTTTTGTGAATGTGACCAGGCCGCCATCGACTGCATGACTCAGAGCGCTTCCAGCTCGGAACTGAGAGGCCTCGCCGCCGCGTCCTGCGCCGCTACAAACCACACAGATGTTCTCTCAGCGGGCAACGACTCTGCGAGCCAGCAGCTGTCCAACTCTTCCTTCCTGTcagcagAGATGGACCCGCTAATGACCAGCAGCGTGGGTAACCGCAGTGACCTCATCACCCCACCGCCAGGCTCGCCCCTCCTGCTGACGCACGCAGATTTGAATGGGGGTGTGACGGAGGAAGCGCTGGAGCAGGAAGACGTAAATAAGGATCAGACGACCCACAATCCACCAGCAATCAGTCGCGATTCAGTTCCGTTCGTCTACGACAGAGAAACGCTGAGCGAAGAAGAAGCAGAGCCGGACATACTCTCGGCACTCAGCTTCGGAGATGAAAACACGGTGACGTCTTCAGCACCCACAGCTTCACGCGCTGACACCTCACCTTCCAGTCGGACTACAACCTCCCTGAGGACTACAACTcccagagagatggagaagtcATCTGAGGAAGGTTCAGTCATCGTTACAACTTCATCACTGACAGCAGCAAAACCACAAATCAGTCCACCGGAGGAAATAAAGTCGTTATctaaagaggaagaagaggaagaagaagatgatgatgatgatgatgaagatgatgaagatgatgatgatggtggtgatgatggtggtggtgatggtggtggtgatggtggtgaaGGGGAGCAGGGAGCTTCAGATGAACACGTCCAGGGTATACTCCCAAATCGGTTTACGACTACCACCGCTAAAACAGCGACATCTACACCGACTGTAACCACGGAGAAGTCCAACGGAGGGAAAGGGAGCTCGACACCGTCTGCAAAGAGAACTTCAGCCTCACAAACAGGTGGAGGAGGTGTCACCTTTCCATTTACACCAGCAGCACCTTCAGCTTCAGAGGAGGCCCGAGAGCAGGCTGGCAGCCCGGAGAAGGCAACTCAGGGCCCAGAAATGGTTACCATGGTGACCAAAACACCCTCCACAAGAAGCTCCCGACCAGGAAGCCACCCAGAGGAAACGGCCGCCGTCTCACCCGTGTTACCTGATTCCTGGGAGGAAGACTTGAGTCTGCACACACCTGCTGCTCTTCCTCTCAGCCCGCTGAGCCAAGGACAGGAAACTCCCCAATCCACAACGCCGACTTCGACGAGAAGCGTCTCTCAGACGTCGCAGGAAGGAAGCCGAGTCCCCTCCGCCAGACCCCGATCAGAGATCGGCGCCTCCAGCCGACCCACGCCGGCGGCTGAATCTGAGGAGGAGCGGCAGGAAGAGACGGAAacagcagaggaagaggaggccgaCAGCTCGctggagaaagagacagacgACTGGGACGTGGCTCAGAAGAGGACGGTGCCGTTCTTCGCCTGGTCCCTGCTGGAGTCTGTTGGCTTGTCCGACCTCCAACTACAGCCAGACAGCAAAGAATGCAGCCGCTCCTTCACCGTGTTCGGCAGCGACGGGCGAGCCAGGCGGGAGATGGCGGCCCTGGGGGAGATGCTGCACTGCGTGACGGGACGGTGCCCGCATGAGTACGAGATGTACGGCTGCTACTGCGGACAGGAGGGCGGGGGGCAGCCTCAGGACCAGCTGGACAGGTGTTGCTTCTTCCATCAGTGCTGCCTGAAGCAGATCGGCTCCATGGGCTGCCGCTCGGACAGGACGCTCAACGCTCACGTCTCCTGCGACAACGGGAAACCTCGATGCCACGGCGTCTCCGTCTGCGATaagctgcagtgtgtgtgtgacaaagcCACGGCAGAGTGCATGGCAGCGGCCCACTTTAACCACAGCGTGCCGGCGCAGCAGTGCCGCGGCCCCGCGCCTCCCTGCCGCCGGGCCAGCAGGCCCCCGAAACCACGGCTTTCCCCTCAGTCCAGCGAGGAGAGCGACGAGCCGCAGGGATCCAACTCGGACGGGAACATCCGGGACACTTTGACGGACACAAACACGCCGCCGCCACGCCGAGAGCAGAACAGtGATGAAGACTCTGACCAGCAGCACGAAGAGACGCCCAAGAAACCTCTGGCTGGATGGTCCGGCAGCTCCACACCCccccctcctcatcctcctcctcttcctttctcCGGCAGCGAGGAGACCAGAGAGCCGCCCAGAGAGACACAAAGCGGGATTCAAACCCACAACCACAGGCCGAGTGCAGGGCAGAGCCAGGGCCAAAGACCAGGGGGGACGGGACCGGGGGGTACcggggagaaagaggaggagaaggaagaagaagaggggggagaggaggaagaggaagaggggggaggagaggaggaagagggaaacTAAaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151187 lncRNA upstream 48588 4788627 ~ 4788876 (+) True G112140
TU150864 lncRNA upstream 203222 4633886 ~ 4634242 (+) True G111925
TU150857 lncRNA upstream 207659 4628720 ~ 4629805 (+) False G111920
TU151203 lncRNA downstream 389 4888601 ~ 4891470 (+) True G112155
TU151204 lncRNA downstream 389 4888601 ~ 4891470 (+) False G112155
TU151205 lncRNA downstream 389 4888601 ~ 4891470 (+) False G112155
TU151206 lncRNA downstream 389 4888601 ~ 4890200 (+) False G112155
TU151202 lncRNA downstream 3341 4891553 ~ 4894526 (+) True G112154
XM_039814912.1 mRNA upstream 2411 4805564 ~ 4835053 (+) True LOC120567839
XM_039814535.1 mRNA upstream 52093 4616033 ~ 4785371 (+) True kcnq3
XM_039816106.1 mRNA upstream 245117 4527422 ~ 4592347 (+) True dnaaf11
XM_039814903.1 mRNA upstream 363090 4458884 ~ 4474374 (+) False tmem71
XM_039816414.1 mRNA downstream 310881 5199093 ~ 5336492 (+) True adcy8
XM_039816108.1 mRNA downstream 516241 5404453 ~ 5408621 (+) True LOC120568538
XM_039815523.1 mRNA downstream 613471 5501683 ~ 5668717 (+) False myo10
XM_039815522.1 mRNA downstream 613472 5501684 ~ 5668717 (+) True myo10
XM_039816132.1 mRNA downstream 900011 5788223 ~ 5789417 (+) True LOC120568547
TU150839 other upstream 291382 4545425 ~ 4546082 (+) True G111910
TU150815 other upstream 298259 4528364 ~ 4539205 (+) False dnaaf11
TU150822 other upstream 298259 4528364 ~ 4539205 (+) False dnaaf11
TU150808 other upstream 307715 4527915 ~ 4529749 (+) False dnaaf11
TU151330 other downstream 900144 5788356 ~ 5789292 (+) False LOC120568547
TU151409 other downstream 1115473 6003685 ~ 6016600 (+) False LOC120568055
unassigned_transcript_535 other downstream 1351969 6240181 ~ 6240262 (+) True trnas-cga_6
unassigned_transcript_536 other downstream 1352610 6240822 ~ 6240903 (+) True trnas-uga_21
TU151560 other downstream 1363178 6251390 ~ 6321990 (+) True G112400

Expression Profile