RNA id: XM_039814501.1


Basic Information

Item Value
RNA id XM_039814501.1
length 2591
RNA type mRNA
GC content 0.55
exon number 2
gene id onecut3b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27095802 ~ 27107726 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGCTCACCATGGAGAACCTTCACAGCGTCTCCTCGCACTCCCAGGCGGGAGACCTCATGAGCTCTCCGCACGCGCGGCCGTCGCCGTCCCCCAGCTCCGCTTCCCGGAATCTGGTCTCACACGCTCCCGGCGCGCGGACAGCCATGGTCTCCGGCATGGCCTCGCTCCTTGAGAACTCCGGTGGGGACTACCGGACGGACCCGTCCGCGCTGTCCGGACACCTGCACCCGTCCATCAGCATGTGCGAGACCGGGATGAGCCTTAGTAACACATACACCACGCTGACCCCTCTGCAGCATCTACCTCCGATATCCACCGTCTCGGATAAGTTTTCCCACCCGCACACTCACCACCATGCTGCCGCCCATCAACGACTCTCCGCCGGGAACGTCAGCGGCAGCTTCACGCTGATGCGGGACGACCACCGGGGGCTCGCCTCCATGGGCAATCTGTACAGTCACTACCCCAAAGAGATGTCCGTGTCCGGTATGGGCCACGGCTCGCTCTCCCCGCTGTCCAGCGGTCTGGGTTCTTTGCACAACTCCCAGCAGCCGCTGTCAGCCTACGGTCCAAGCGCACACCTCTCCACGGAAGCCAAGATGCTCTCTCCGGTGTCAGGGTTTGAGTCCCACGCCTCCATGCTGTCCCGAAGTGACCAAGAGCACCTGGCCAGGAGTTTAGGGGGTCACGGCCACGGTATGATCTCCAACCTCAATGGCATGCACCACCACCCGCACAGTCACCTCCACTCCCAGGCGAACGGCGCGGTAATGCTGGGGGGCCGTGAGAGGCACGGCCACGGAGCCGGGCAGGGAGTAGCAGGGTCAGGCATGCAGGCAGAGGAAATCAACACAAAGGAAGTGGCTCAGCGGATAACGGCCGAGTTAAAACGGTACTCCATCCCGCAGGCCATATTCGCCCAGAGGATCTTGAGCCGATCGCAGGGAACCCTGTCAGACCTGCTACGGAACCCCAAACCCTGGAGTAAGCTCAAGTCAGGCCGGGAGACCTTCAGGAGGATGTGGAAGTGGCTGCAGGAGCCCGAGTTTCAACGGATGTCTGCTCTACGGCTGGCCGcATGTAAACGTAAGGAGGAGGACCGAGGACGGGACCGCAACCAGGTGCCAAAGAAGCAGCGACTGGTCTTCACCGACCTGCAGCGTCGCACTTTGGTAGCCATCTTCAGAGAGAACCGCCGCCCCTCCAAGGAGATGCAGATCACCATCTCCCAGCAGCTGGGCCTCGAGCTCTCCACCGTCTCCAACTTCTTTATGAACTCACGCCGCCGCTGTACGGACCGCTGGGACACAGAGGAGCACAATCACGGGGTGCATGGCCACGTGCACACTCCTCATggaaacagcaacaacaacaacaacaactcaccGATCCAACCTGGTACCTCCTGTGCAGCCACTTTCTCTAAGGCCTGACGGTGGCAGGACGGATGGTTGAACAGATGCATGGAGGATGGAGGCgggggggggtgtttttcaCTAAAGCGCTCCTGCAGAGCTACAGGGTGTTTAGCTTCAGACCACTCATCTGATTCATCTGCTCAGAGTGCTGATGACTTGTGCAGATGAATCAGATCTTCTCAATGCTCCATGTGTTTTCTTTCAATCTGAATGTTACTCTTAGGGGTTAACACGCATTTCAAATTGTGGTTCTTCAAACCAAAGATCCAGTAGCTTTAAGAGAGGTGCCCTGAAACAACCACACAGTGGCTCTGAGTAAATCCAACTGAAAACCAAAGGAAATCCATCTACACTAAACCGCACTGTGGGTCTGTGTTGAAGCCTTGAAAGGGGGAGGTTTTGCTTTAGGATCCTCTGCTGATTGTCAGGATGTAAACACACCAAAGAATCACTCATGACAGGGAACAGATAGCTTTAAGACAGGAAAACCTTGAGCAGCCGCTCGTTGGTCTTCCCAAATCAGCCAGAAATCAGACAGTGGATGTGTCTGCCGGGCCGTGATCGACCACTCCTCATTTCAGTTACAGACACTGAGGCTGATTGAGAGGTACGCTTGTGTGTCAAGTGTCTGTTAGATGCTCTCGGCAGGTCCTTTGACCCGCTAACCACATACCACTTTTCGCGGCTCTGCGTCACTGCAggcgtgtgtgtacgtgtgcgtAATGTTCACATGCTTCGGGTTGCTTCTGGGGGTGTAATTCCTCTGCAGTGATTCGGTCCTGCTCCACGTCAGAGTAACAGTGCCACCTGCTGTCCATTAAAACCACATCTAAACAAGTTCGAGCATGTAGGTGCACCTCAGTTGTCCAGCAGGCCTACCTCAACACAGTGTAGCCTGCATTGTAGATTTCTATTAGGATAAAGATACCAATACTCTATATAAGCAGGAGTGTAGACCCTGCAAACAGcaaacaaactgagacacaaTGATAAGACATGATTACTCACAATACCCTTTGATACACATTTGAATGTTTGTTTCTTAAGACTCGTTGTACGGCAACATGGCCATAGACTGTGTAGCCACTTGAGAGGTTATtttcaggttaaaaaaaaggagaacaaTCAAACAGGGATGACACTCCCCACATTTAAAAAGTGTCATGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159467 lncRNA downstream 132050 26960400 ~ 26963752 (-) True G118308
TU159466 lncRNA downstream 132697 26960400 ~ 26963105 (-) False G118308
TU159313 lncRNA downstream 363718 26731877 ~ 26732084 (-) True G118186
TU159297 lncRNA downstream 430621 26661621 ~ 26665181 (-) False G118175
TU159275 lncRNA downstream 494417 26532167 ~ 26601385 (-) True G118165
TU159494 lncRNA upstream 11306 27119032 ~ 27190233 (-) True G118328
TU159504 lncRNA upstream 66826 27174552 ~ 27197648 (-) True G118337
TU159509 lncRNA upstream 71386 27179112 ~ 27182570 (-) True G118341
TU159516 lncRNA upstream 75982 27183708 ~ 27187200 (-) True G118345
TU159506 lncRNA upstream 90856 27198582 ~ 27199689 (-) True G118339
XM_039814779.1 mRNA downstream 93750 26998041 ~ 27002052 (-) True LOC120567768
XM_039816759.1 mRNA downstream 105029 26986732 ~ 26990773 (-) True plekhj1
XM_039816760.1 mRNA downstream 105062 26986732 ~ 26990740 (-) False plekhj1
XM_039815928.1 mRNA downstream 110756 26977016 ~ 26985046 (-) True LOC120568414
XM_039814507.1 mRNA downstream 205905 26881797 ~ 26889897 (-) True sugp1
XM_039814770.1 mRNA upstream 103289 27211015 ~ 27244441 (-) True LOC120567762
XM_039814771.1 mRNA upstream 104117 27211843 ~ 27244441 (-) False LOC120567762
XM_039814774.1 mRNA upstream 144808 27252534 ~ 27261346 (-) True LOC120567764
XM_039816938.1 mRNA upstream 187644 27295370 ~ 27307660 (-) True sirt6
XM_039815154.1 mRNA upstream 202579 27310305 ~ 27317595 (-) True LOC120567993
XR_005640672.1 other downstream 271232 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 429850 26661621 ~ 26665952 (-) True G118175
TU158687 other downstream 2172484 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 2559306 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 3074301 24021439 ~ 24021501 (-) True LOC120569138
TU159721 other upstream 563250 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 605741 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 609825 27717551 ~ 27718759 (-) True G118524
TU160079 other upstream 1878365 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 2312653 29420379 ~ 29420652 (-) True G118856

Expression Profile