RNA id: XM_039814513.1


Basic Information

Item Value
RNA id XM_039814513.1
length 2246
RNA type mRNA
GC content 0.52
exon number 14
gene id mfsd8l2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15290082 ~ 15304610 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTCAGGCTTAAACGCCAGTGAAGAATCTGATTTTGACCTGTTGTTGTGACTCTGCTGAAAATAACCTCACTTAAGTCTCTTCCATCTCCAGCACCTGCATAGGCTGAGCCTACCTCCTGCTGGTCCGCTGCCATTGCCTGGCATAAATTCCCCACCACCAGATGCCATCTGCTTCCACCAGGATAACCACCTCACCACCTTGTTTTACTCACTTCACTTGCAATGTTTTCAAATCCTTGCTGTCCGACCCAGTAGATAGTCCTCTCTTACCGTGTCTGCCGCCTACGAGCGCCCTGCAGGTTGATCTTAATCGGGATAGTGAATGACCTCCGGGGAGAAGCTGTGTTCAAGAACATGCCCACTCCTATCTCTGTCCAAGCCACCTCCCAGCCCtgaGCTCCAGTGAAGCGCGCTGACTGACTGAGTGGACCAGATTGCAGTTTATTCACCAGGGGACTTCCTGTTGTTTACCAAGGCTCAAAGGTCTCACAACCTGCTGAGCCTCATGGGAGAAGCCCCATATGATCTCAGTTTTCTATCTTTAAGAAGCTCTAAAATGAACTTGTACAATGGTGCGACCAATTCTTTGGAGCAGTTGTAATTGGATGCACAGTGTTTCTTGTTATCTGAAGCCACTGAACAACATTTTTGAACAACGTTTGCAGTCAGAGGTTGGCTTGTAAAAGGCAGCAAGTCACTGAGCAAATGGATAATCACCAAAAGAGGAATCTAACTTTTTACACCATTGGACTGATATTTATGCTGAGCGGCATTGAGTATGCCGTCATTTTGCCCACAATATGGCGGTATCTACAGATTTTGGAGGCCCCCCCTTACTTCCTGGGTCTGGGTCTGTCTGCCTTCAGTCTGAGCGGACTGCTCACAGGCCCCCTTTTTGGGCTCTGGTCAGACCGGAGCAGAACTACAAGGTCCATCATCCTTTTCTCCAATCTTTTTGAGATTGCTGGTAACTTCATGTATTTTATTGGATATTCCAAGTGGCTGTTGTTATGCAGTCGGCTTGTAGcagGTGTCGGTGCAGGAGCGGGCTCCTCCATCTTTGGTTTCCTGACTCAGAGCACTCGGCCAGAGGAGCGCGCTGGCGTCTTTGCAGCCATCATGGCCTGTCGACAAGCTGGCCTCCTTGTGGGGCCGGCGTTCAACCTGTTCCTGCGGCTGTGTGATTTCAAACTGGGGCCCTTTGTTGTGAACAAATATACGTCTCCTGGGATTTTCATGTGCCTGTTGTGGGTGCTGCTCCAGTTTGTGGTCCTGGCTATGTACTGGGATGTACCACCCATCAGCTCAGAGGGGGGCGTAGTGATGGTGGAGATGAAACAATCGcaggatgatgaggaggaggtgctgcTGATTGGGTCCGACGATGAGTCCGTGCACACCTACAAAGCTGTCAACTCTGACCAATTGGAGACCTCTGCATCGTCTGAGCTGCAGCTTGTCCATGGCGCCTCTGCAGTCTCCGATCCCTACAAAACCTTCAGTGCCAGCAGAGAGTTACTGAGAGAAGAGGTGGTTGTTCTCCTCACGGCGCAGTTCATCACTCTCTTCAATCAGACAGCGCTGGAGACCATGGTGACTCCTCTGACGCAGCGCCACTTCAGCTTTGGCGAGCTGGGCAACAGCCTGATGTACAGCCTGTGCGGGGTGGAGGTCATCCTGGGCTTCTTCTTTGTGCGCTGGCTGAGCAGGAAGGTGGCGGACCGCGCCGTGTTGGCTGTGGGCCTGGTCATCTGCTGCACCGCTTGTATCTGGTGCCTCATCTTCCTCTGCAACCCCCGAGGTGCTAACCTGTCCggGTGGATATGGATGggagctgtcggccttcatcATCGGAGTCTTTCTGCAGTTGCTGGGGCTTCCCTTTGTGGCCGTGTCTCAGGATTCAGCCAAGGTGTCAGACGCTCAGTTGGGGGCCTGGCCACCATCTTGGGTCCTTTATGGGCCGGAGGACTGACTGAAAACTTGTACATAATGCTGGGCATGATGTTAGCCCTCCTCATAATGATCACTATTATGACAGTGCTGTCCTACGACCGGCTGACTGAGCCCAGGGCAGTGCAGTGCGCCCAGAGCTCTGACAGCGGAGGCTAGAGCCGCAGTCTGTCTGAAGAGCCCGAGAGGTTGAAGACGGACAGAGGGAGTGCCCTTCACTTCTGAGAGAATCAATAAAAGTTTACTGCAGAGGAAACTGTATGACCGTGGAATAAAAATGttcaaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154900 lncRNA downstream 23858 15264520 ~ 15266224 (-) True G114836
TU154790 lncRNA downstream 208102 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 287037 15001144 ~ 15003045 (-) True G114733
XR_005640751.1 lncRNA downstream 331679 14954578 ~ 14958403 (-) True LOC120568695
XR_005640836.1 lncRNA downstream 507610 14780276 ~ 14782472 (-) True LOC120569096
XR_005640790.1 lncRNA upstream 82868 15387478 ~ 15393259 (-) True LOC120568803
TU154969 lncRNA upstream 102767 15407377 ~ 15407627 (-) True G114883
TU155136 lncRNA upstream 416409 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 430444 15735054 ~ 15735281 (-) True G115041
TU155170 lncRNA upstream 430870 15735480 ~ 15735895 (-) True G115042
XM_039816697.1 mRNA downstream 72600 15211287 ~ 15217482 (-) True LOC120568939
XM_039816696.1 mRNA downstream 90853 15194894 ~ 15199229 (-) True LOC120568937
XM_039815300.1 mRNA downstream 130308 15152126 ~ 15159774 (-) False LOC120568091
XM_039816035.1 mRNA upstream 6772 15311382 ~ 15328062 (-) False LOC120568471
XM_039816033.1 mRNA upstream 6772 15311382 ~ 15328062 (-) True LOC120568471
XM_039816036.1 mRNA upstream 6772 15311382 ~ 15327627 (-) False LOC120568471
XM_039816034.1 mRNA upstream 6772 15311382 ~ 15327627 (-) False LOC120568471
XM_039816037.1 mRNA upstream 24654 15329264 ~ 15330964 (-) True LOC120568473
TU154687 other downstream 493038 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 674310 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 2201519 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 2521457 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 2687173 12601180 ~ 12602909 (-) False nedd8l
XR_005640842.1 other upstream 106552 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 107053 15411663 ~ 15411840 (-) True LOC120569141
XR_005640844.1 other upstream 107783 15412393 ~ 15412467 (-) True LOC120569142
XR_005640845.1 other upstream 108376 15412986 ~ 15413059 (-) True LOC120569143
TU155326 other upstream 839550 16144160 ~ 16148121 (-) True G115164

Expression Profile