RNA id: XM_039814514.1


Basic Information

Item Value
RNA id XM_039814514.1
length 2478
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC120567605
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8079296 ~ 8085926 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTCATCACATGAGGATGAACCGGCATTCCTCACACAGGCTGCTTGCAAAATTTACAGTGACAAGCAGTGCATTCATAGTCTCTGGGTTGGAAAACTCCAGGAACCTAGGGTAGCATCTTTAATACATCTTaaataatccttttttttttctagggcTGTTGACTTAAATTAAGCAGGCAACAGTTAGTTAATCACTGTCAGTGTGATCTGTGTGGACCTTCAGTAGCGTTTAGTGAGCCTCCTGAGGTGGTTGATCTTTCTCTCATCGTCATCATCAACAACATCATGACCATTAGCATCGCCCTGATCTGGGCAGTAGTGGTGGGATTCTGCTGCCTTCTATGGCTCGCTGTGGGGATACGACGCAGGCAACCTGGTGAACCTGCAGTTGAGAATGGCTTCATCCCCTACCTGGGTTGTGCTCTGCAGTTCGGAGCCAACCCTCTTCAGTTCCTCCGCAGCCGCCAGAAGAAGTACGGCCACATTTTCACCTGCAAGATCGCAGGCCagtacatccacttcctgtgtGACCCCTTCTCTTACCATTCAGTCATCCGACAGGGGAGACACCTGGATTGGAGGAAGTTCCACTTTGCAACATCTGTCAAGGCGTTCGGCCATGACAGCTTTGACCCTCGCCATGGCCACACCACAGAGAACCTTCACCAAACCTTTCTGAAGACGCTGCAGGGTGAGGCTCTGCCCTCCCTGATAGAGACCATGATGGGCCACCTCCAGGACGTCATGCTGAGGTCGGGCAAACTGAGCCCTGGCAAGGACCACTGGGAGGTGGATGGCATCTTTGCTTTCTGCTACAAGGTGATGTTTGAGTCCGGCTACCTGACTCTGTTTGGTAAAGAGCTCGGTGAAGACAAGTGTCAGGCCCAGCAGGCGGCTGAGAAAGCCTTGGTGCTCAACGCTTTGGAGAACTTCAAAGAGTTTGATAAGATCTTCCCTGCGTTGGTGGCTGGCCTGCCCATCCATGTCTTCAAGAGTGCTCACAGTGCCAGAGAGAACCTAGCAAAGACCATGCACGCTGAAAAGTTGTCCAAGAGAGAGAACATGTCTGATCTGATCTCTATGAGGATGATCCTGAATGATTCCTTATCTACCTTCAATGACGTGAGCAAGGCCAGGACCCACGTCGCTCTGCTCTGGGCGTCACAGGCTAACACCCTGCCTGCTACcttctggagtctcttttacatGATCAGGAGTCCCGATGCTATGAAAGGAGCCCGACAGGAATTGCAGAAAATTCTGGAGGATTCAGGCCTGACGGTGGACCCTAGTGACCCCACACTGAACCTGACCAGGGAACAGCTGGACAACATGCCTGTTCTGGACAGCATCATAAAAGAAGCCATGCGTCTTTCCAGTGCTTCCATGAACGTACGTGTTGCCAAGGAGGACTTCCTGCTTCACATGGACAACAATGAAGCTTACCGTATTAGGAAGGATGATGTCATTGCCCTGTATCCACCCATGCTGCACTACGATCCAGAAATCTTTGAGGATCCTTATGAGTACAAGTTTGACCGTTTCCTGGATGAGAAGGGTCAGGAGAAAACCACCTTCTACCGCAACGGCCGGCGGCTGCGTTACTTTAACATGCCCTTCGGCTCTGGCGTCACCAAATGCCCCGGCAGATTTTTTGCTATGTACGAGATCAAGCAGTTTCTGACTCTAGTGCTGTCCTACTTTGAAATGGAACTATTGGACCCTGCTATCAAAGCCCCCCCTCTTGACCAATCCCGTGCTGGCCTGGGAGTCCTCCAGCCTACTTATGATGTGGACTTCAAGTACAAACTGAAATCGAACTACTGAGCACTTTGTCAAACAGAGTGATTGAAGTACATATTGTACATAGTGTATATATTTAACCGTGTTAATGAAGATGCCTTGCAGTATATGTGAATAGACtgaattatgtattttttgttgctgtaattTGCTGCTGATGAACATGTATTCTGCATTTACAAACTGTTCAAACCCTTCATCTGGTAGTGTTGTACCAAACATTTCCTGTCTCTGTTGGACCAGACATCTGGCATCTCAGAGTAAAAGTGCTGAGTAGCATATCCAATTCCTGTGGACAGACCTAGAGCcatatacatttataaaataaatgggtttttttttggcatGTTTGGCCCATTTACccaaaatctaaatctaaaaattAATGCAAACAGTTTTTATCGTTGTTTTGAATAGATTCCACTATGCCAAATTACTGTATCATGGTTCTACATAGTAGACTCCTAAAATCAATCTGCAATTCTTGAGACAAGACAAGATAACCTTTTAAAGAATAAAAGTCTAGAAACTAGTTCTAAAAGAACTAGAaacttaaagctccattgtgtaatgttttgagttgattcttagcaaaaaaacctttgttcatgcacaaatatgtgctcattcatgtgtaattacttccaccaactaatcaaagatTTCTTGtca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00489 CYP7A1; cholesterol 7alpha-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152206 lncRNA downstream 19263 8056602 ~ 8060033 (-) True G112903
TU152205 lncRNA downstream 33815 8044110 ~ 8045481 (-) True G112902
TU152161 lncRNA downstream 109962 7967433 ~ 7969334 (-) True G112876
TU152162 lncRNA downstream 112991 7964439 ~ 7966305 (-) True G112877
TU152172 lncRNA downstream 153104 7924102 ~ 7926192 (-) True G112887
TU152192 lncRNA upstream 53524 8139450 ~ 8192584 (-) True G112897
TU152230 lncRNA upstream 124901 8210827 ~ 8211057 (-) True G112922
TU152232 lncRNA upstream 126194 8212120 ~ 8212771 (-) True G112924
TU152231 lncRNA upstream 129983 8215909 ~ 8219170 (-) True G112923
TU152301 lncRNA upstream 368565 8454491 ~ 8454705 (-) True G112980
XM_039817008.1 mRNA downstream 11847 8063083 ~ 8067449 (-) True tmem70
XM_039815391.1 mRNA downstream 56390 7971949 ~ 8022906 (-) True LOC120568123
XM_039816546.1 mRNA downstream 118229 7952012 ~ 7961067 (-) True ttpa
XM_039814956.1 mRNA downstream 149358 7904205 ~ 7929938 (-) False asph
XM_039815670.1 mRNA upstream 17475 8103401 ~ 8136557 (-) True cntnap2b
XM_039815671.1 mRNA upstream 54306 8140232 ~ 8146892 (-) True ccr12a
XM_039815672.1 mRNA upstream 54306 8140232 ~ 8146891 (-) False ccr12a
XM_039815674.1 mRNA upstream 64298 8150224 ~ 8158788 (-) True LOC120568280
XM_039816994.1 mRNA upstream 92359 8178285 ~ 8187676 (-) True LOC120569115
unassigned_transcript_534 other downstream 1851512 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1852550 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1858199 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1858762 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1859342 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 401541 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 694526 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 786508 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 787484 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 806005 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile