RNA id: XM_039814536.1


Basic Information

Item Value
RNA id XM_039814536.1
length 1803
RNA type mRNA
GC content 0.44
exon number 3
gene id snai2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21707253 ~ 21709643 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAGCGCAGCGCCGCACCATGACACTCACTGGACATAAGCATTAAGGATTTCCGTCTTCACAAAGTAAACTCGCCTCTATATTTTCCAAGaaaaaagtttgccaaaagttGTCCACTTGTTTTCCAAGATGCCACGCTCTTTTCTGGTCAAGAAACATACAAACTCAGCAAAGAAGCCAAATTATAGTGAGCTGGAGAGCCCAACAGTGTTCATCACGCCGCACATCTACAGGAGTCTTCCCCTGCCTGTCATCCCCCAGCCGGAGATCCTGAGCCCGGCAGCGTACAGCCCCATCACAGTGTGGACTACCAGCAACTTGCCGCTGTCTCCGCTCCCTAGTGACCTCTCCCCCATCTCTGGATACCCCTCATCGCTCTCCGACACATCCTCTAAAGACCATAGCGGCTCTGAAAGCCCGAGGAGTGATGAAGACGAGCAGATGCTGCCCAAGCTGACAGACCCTCACGGAGTGGACGCAGAGAAATTCCAATGTAGTTTGTGTAGCAAGTCCTACTCCACGTACTCTGGACTGCTCAAGCATAAACAGCTGCACTGCGACGCCCAAACGAGGAAATCCTTCAGTTGTAAATACTGCGAGAAGGAGTATGTGAGCCTGGGAGCTCTCAAAATGCACATCAGGACTCACACGTTGCCTTGTGTTTGCAAAATATGCGGGAAAGCTTTCTCCAGACCGTGGCTGCTCCAAGGACACATCAGGACGCACACCGgagagaagccattcTCCTGCCCTCACTGCAACAGGGCTTTTGCGGACAGGTCCAATCTCAGGGCTCATCTACAGACCCATTCGGATGTGAAAAAATACCAATGCAAGAATTGCTCCAAAACCTTCTCCAGGATGTCTCTCTTGCACAAGCATGAGGAATCTGGTTGTTGTGTAGCACACTGAACTGGGATACTTTTCCACtaccagagagaaaaaaaaaactctgttgcTTCTTTATTTTTCCAGGAGAACTGTCAGGGAATCACATCGAAGGGGGTTTGTTCCCAAATATGCcgactttttcttcttctaggaACAGTCCATTTCATTTCAGAGTGAGAAATAGCTCTGTGCTCACGTGCTTCTCGTTTCAAGCAGTGTTTCTGTGATTGCAATCGCTGTCGAGCTTTGTCATGCCGTGTACTCACCTACCTGTGCTATTCATgcactttcctgcatgtctaGAATGTTTTATATGCCTTCACAATGTTATCTGCAGTGTTTTGTACAAATGTCTCTCAATGGCTGTTATGCAGTCCTCCACTTTTCTTTATACGCACCACACAAACGATACCAAAAGGCGCATTATGAATGACAGTATACATATAACTAGAGGAATACTGAAGCCATCGTTACTTAGGGAACAAGTGCAAACTTATTTTTTAGGGTGAAAATATAACTTTTTTGCACATTAGAAACCAGTTTGCCAGCACTCAACCagcaaaatacattttctcaagTGCCTCAGTTTTATTTGGCAATGATATGTATTATTTCAACAACAGTTTCctgttatatttttatatattgaaTGTAAGCGTGACTGAGATGATTGTATATTTACAGTGAAAACTGTGATGCTGAATGATTTtgatattttcatattttcatgACACTTTAAGAAATAAAGTTTCATGACATTTTGTTATAATTTTTGGCATCCTTCAAATCGCTTTTCATCTGTGAAGCCTTTGGTGTATGATAGGTTCTTTCAGCAGGACTCAGCAGCATTCCGTGATTGTTACACGCTTTAAATGGTATAACTTGCACAAAAGTAAATGATATTTAATACAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K05706 SNAI2, SLUG; snail 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157363 lncRNA upstream 44783 21614100 ~ 21662470 (+) True G116746
TU157330 lncRNA upstream 206859 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 380990 21270751 ~ 21326263 (+) True G116657
TU157170 lncRNA upstream 462860 21243641 ~ 21244393 (+) True G116616
TU157136 lncRNA upstream 573241 21129608 ~ 21134012 (+) True G116583
TU157416 lncRNA downstream 124823 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA downstream 124823 21834466 ~ 21836347 (+) False G116794
TU157508 lncRNA downstream 225876 21935519 ~ 22020278 (+) True G116857
XR_005640669.1 lncRNA downstream 315470 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 315470 22025113 ~ 22035741 (+) True LOC120568180
XM_039815402.1 mRNA upstream 46745 21648818 ~ 21660508 (+) True pcmtd1
XM_039815403.1 mRNA upstream 46745 21648818 ~ 21660508 (+) False pcmtd1
XM_039815399.1 mRNA upstream 64757 21602052 ~ 21642496 (+) False st18
XM_039815194.1 mRNA downstream 87795 21797438 ~ 21798854 (+) True cebpd
XM_039815806.1 mRNA downstream 161310 21870953 ~ 21897183 (+) False LOC120568354
XM_039815807.1 mRNA downstream 161310 21870953 ~ 21893132 (+) True LOC120568354
XM_039815805.1 mRNA downstream 161310 21870953 ~ 21891619 (+) False LOC120568354
XM_039815812.1 mRNA downstream 189925 21899568 ~ 21916897 (+) False klhl14
TU157037 other upstream 791965 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1331620 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2190308 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2688527 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 3033191 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 161310 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 898421 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 931867 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1967436 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2141236 23850879 ~ 23855157 (+) True G117319

Expression Profile