RNA id: XM_039814547.1


Basic Information

Item Value
RNA id XM_039814547.1
length 1885
RNA type mRNA
GC content 0.43
exon number 6
gene id jmjd4
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21051339 ~ 21053776 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACGTATTGTTAGCTAGGACGGCGGTTTCTGAAGTAGCTAAAATAGCATGCACTATTCGCATTAAATACATtgaaacattaatatagcagtggTGACTATATATAAACAGCAACAGTTTTGCATGTGCGGCGTTCAGGAATTATAACCTAGTAACATTAGCTAACTAGCTATATCTTCGGGATGGAGTGCTatcaaaatagaaaaaaatacgTTTTAGCATAATGTTAGCTTTCTAGCCTAAGTTTGACAGCAACAGTGAAACGACGTACGCTATGTAATGTCAAACCAATCGACCCGCTCGCTTTTCCTTACCGTTTCTTGCTGTCCAAGCGGTGACagctagcttgctaacgttAACTGGCTAGCCGATGTCTTGTTTACCCAACAGTCTGTTTACCATTATGGACAGGGAGGCGTACCGTAACTGCTGCAGCCTGGTCAAAATACCAAGACAGTCGTATGAACAGTTTTGGTCATCACATTTTGTTGACTACATCGACAAGGAGCTGAGCTATTCTAAGTTTTTCAAGAAATACTTGCTTCCCAATCACCCATGTATGTTTTCAAGAAGGTTTACGGAGAACTGGACGTGTAGAAAACAGTGGGTGTCTGAGGAGGGGAAGCCTAATTTCCAGAAACTGCTGCAAGAGTTTGATGAGATTCCTGTTCCTGTTGCAAATTGCAATGCAAAGGAGAACAATGCAAACCCTAAACAAGTTATGCCTTTTAAAGAATTTATACTCTACTGGAAGGAATACATCCAGTATGGCCACTCATCACCTAAAGGATGTCTCTATCTTAAAGACTGGCACATGTCAAGGGACTTCCCAGAACATAATGTTTACACCACACCAGTCTTCTTTTCTTCTGACTGGCTTAATGAATACTGGGATACACTTGAAGTGGATGACTACCGATTTGTCTACATGGGACCTAAAGGCTCATGGACCCCGTTCCACGCGGATGTGTTTCGGTCCTACAGCTGGTCTGCAAACATCTGTGGCAGGAAGAAATGGCTCCTGTATCCCCCAGGTCAGGAAGAGTTTCTACGAGACACTCACGGCAACCTCCCTTATGATGTAACATCAGCTGAGCTTCGAGACAGAGGCCTTTTTCCACACTCCGAAAAAGCATGTCAACCTCTTGAAATTATTCAAGAGGCAGGTGAAATAATTTTCGTGCCCAGTGGCTGGCACCACCAAGTTTATAACCTGGAGGACACTATCTCTATTAATCATAACTGGCTGAATGGCTGCAACGTAGACATCATGTGGCAGTTTCTTCAGAATGAGCTTTTGTCCGTTCAAAAAGAGATAGAGGAGTGGAGAAACACGATGGACTCGTGGCATCAGCACTGCCAGGTCATTATGAAGGCCTGCTCTGGTATTAATTATGCAGAATTTGCCTCATTTCTGAAAATCATTGCTGACAACCGAATGGCTTTCCTGAATGCTTGTTCCTCTGGGGATTCCTCTGATTGCCCACGGCATCTCTCAGAGACCCTCACCACACTTGGACCTTACCATGCTGCCTTTGACCTACAAAGAGTGGCTCACATAATTGAATGCCTACTCTGCAATGAAGACTTTAAGCGGCTCGATCATTCAACTTTGCAGCCAGAAACCATGTTGCAGCAAATTCGGGACACAATACAATCCACAAGGGGGCAGCATCTCCTTTATCAGGAATAAGATGTTCAGAGGCGTCTTAACATTGTTATCACCCGGAAATGGCTTGAACGAAAAGTGCCGATTTGTACAGTGCAAAAAAAGATGATGATAAAGGTTTTACTACACTTTTGATTTGAGATGAATTGCAATCTCAAATTTTCAATGTTTGGAATTAGTTTTTGcactgaaaaataaaagaaatacaaaagttGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157105 lncRNA downstream 55799 20988324 ~ 20995540 (-) True tmie
TU157050 lncRNA downstream 131623 20918969 ~ 20919716 (-) True G116525
TU157030 lncRNA downstream 223628 20827512 ~ 20827711 (-) True G116508
TU157021 lncRNA downstream 244648 20806153 ~ 20806691 (-) True G116499
TU157004 lncRNA downstream 280311 20768635 ~ 20771028 (-) True G116484
TU157133 lncRNA upstream 4816 21058592 ~ 21061240 (-) True G116580
TU157135 lncRNA upstream 53738 21107514 ~ 21107718 (-) True G116582
TU157207 lncRNA upstream 154966 21208742 ~ 21209773 (-) True G116651
TU157296 lncRNA upstream 243639 21297415 ~ 21300082 (-) True G116692
TU157354 lncRNA upstream 538963 21592739 ~ 21595306 (-) True G116743
XM_039814556.1 mRNA downstream 40763 21008048 ~ 21010576 (-) True higd1a
XM_039814544.1 mRNA downstream 45212 21001980 ~ 21006127 (-) True ccdc13
XM_039814543.1 mRNA downstream 45212 21002211 ~ 21006127 (-) False ccdc13
XM_039816213.1 mRNA downstream 55772 20984801 ~ 20995567 (-) False tmie
XM_039816986.1 mRNA downstream 127675 20920596 ~ 20923664 (-) False myl13
XM_039816859.1 mRNA upstream 79226 21133002 ~ 21151186 (-) True wnt9a
XM_039815361.1 mRNA upstream 143517 21197293 ~ 21201627 (-) True c11h1orf35
XM_039816564.1 mRNA upstream 159890 21213666 ~ 21268376 (-) True LOC120568841
XM_039816562.1 mRNA upstream 219608 21273384 ~ 21284939 (-) True atg9b
XM_039816561.1 mRNA upstream 220965 21274741 ~ 21284939 (-) False atg9b
TU157096 other downstream 40770 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 1255630 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 1585959 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 1828613 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 2115862 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 1208222 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 1209347 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 2376590 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 2414844 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 2814176 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile