RNA id: XM_039814548.1


Basic Information

Item Value
RNA id XM_039814548.1
length 2411
RNA type mRNA
GC content 0.48
exon number 5
gene id snap47
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21053381 ~ 21059750 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGGACAGTAAATACAGCCGTGCTACTGCGTGACGTCACTTCCGTAATAAACAAGCGAGAGTGTGTGCTCAGCCCAACAAGGTGAATCAGTGTATCTCCTTTCATAATGAGCCGGGACGTCCCTATCCACAGCTGGCCCGGTTCCTATTACATCAACAGTGAGAAGCGGTGGGAAAATGGCACCCTGTCCGTCACCAGGACCATGGTGCGCTTCATCTCTAACCAGAGTAAGGAGAGTCTTGCCAGCTTTCGCCTCTCCAGGATCATGGAACTCAAGATGGAGTCGTCTAGTTTTATCTTCAGCACTCTCACAGTGCTTGAAGAGGGCAATGTGAAACACTGGTTTGGCTCCCTTAAGCCCAACAGGGTGGTGGTTTATAATGTCTTAGAGCATTTCTGGAGAGAGCGTCTTTTGTCCCCCAGCTCAGAGTCCCGGGGAGCCGAATGTAAACCCTCTAAAGGCAGAGAGCTGATCAGCCTGGTGGCAGGGGCCCAGAGAAGACTGGAGGACACCGGCAGTGTCCTCAGCCACCAAGGAGAGCAGTTTGACAATATGATGCAGGGACTGGAGAAGATTGACTCAGATCTGGGCGTGGCTGATAAACTTTTGTTAGAGCTGGAGTCTCCCTCCTGGTGGCCTTTTGGTAAACTTCCTTGGAAGACTCAGCAGGAAGCCAAGGCTCAGGACGCTGCAAgagctggagctgctgctgcttctgcagCTGGCAAAGGGTCCAGTAGAAATAAGGTGATCACAAGCATCCCAGCTGTAGTGACCAAAGGCGGGGACTCAGACTTAAAACCCGGATGCTTGTTGGTGCTGGTGTCCTCAGTGGAGGTGCGAGACACAAACTGTCAACTCCTTCACCGTTTTGAACGAAATGACATCGACGAAATCAGGGTGCACAGTCCGTATGAGATCACTGTTAGACAGCGGTTTATTGGGAAGCCAGATATATGCTACAGGTTCCTGTCTGCCAAGATGCCAGAGGCATTGTCAGTGTTAGAGATGCAGTACAAAAAGAAAGTGGAGTTCATGAATGAATACAGTGCTTTCAAAGCAACTCCAGTTTCATCTCCGTGTGATACAGAGGGTCCAAACTGGAATGAAGGTTTGCTGCAGAGGTGCCAAGACACAGAGCTCCCACTGGAGGTCCCAGCAGGAGAGCTGTCCCAGTTGCAGGTGCACGTCCTCCAGCCATCTGTCAGTCAGGCTGAGGCCCAGGAACTCAAACAGATGCTGATGCAGCTGAAGAACCTTGCCCTGGAGGCAGAGACAGAGCTGGAACGACAGGATGATGTTCTTGATGAACTAACCAGCTCCACTGACCGAGCTACCATGCACATAGAGAAGCACACCTGCCGCATGAAAAGACTGCTGTAGCTCTGACAGTCCAGCAGACGCATGCGGTCACATCGTCCTTCCTGAGAAATTCATTGTAAGCTTCCTCATTGCCCTCACAGGATTGGTACAATGTGAGAACAGCGGAAACAGCAGTAGGGACTTGCATTTACTCAAAATAGGATTTGTTTTGTATATAATCACATAAACACATGGGTTCAAGTGTCCGTGATTTCTGGGAAGTTTAGCAATGTTCGTGTAATACTAAAGATGTTCCCCAAAATCTAGGAAATTTGGAAAACGACCCCATATGTCATTTGTACAAacagcaattacgactcatatttatgtttattgttgGGCAGTGCCCTTTAGTGGCCGCAGtaattatgacgggagcaaagcaggaagtaaggtgacgaaGCATAAGAGCGGCAAACTCTgcgtaaggaggcaggttggggggggtggatgggcgACTTTCGTCCAGGAGACCGGAGTTTGTGTCCCGTTAGAAAATAAATGTCAACGtcaggttttaaaaaaatatattttttaacctAAACCATGATATTTTTCTAATCCTAACTAAgacgttttggtgcctaaacctaaccaaactgcgaccgtttTCACAACATTAACGGCCGTTAAGCTTAGGTATAAGGACGGAaaatgctcctgtgggtcgtattttCTGCCACCACTAGGGGCGCTGATTTGTCTAACACTCCTGTAGGTCGTTTAAGAGGGTGGCTTAGAGGACTAGTCGTAAATTTGCCTTTCAGATTATGATTTTGCACTTTGTGCAAATATACGTCttcattgttttatttgaaCAGTTCAATCATGTGTGACTGAGATAAATGAGCAGTCTTTATGAAGAGTAGAGTCTCCACCCTGCCCTCGCAGCCGTGGCTAGCATTGTTAGCATTACATTTGGCTTAGATCAGGGGTCAACGttctttaagccaaggaccccttaactgaaagagagacggagcagggaccccctactacatatattgtatatgattaagttgcatattacactgggcctacaataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157070 lncRNA upstream 23294 21021631 ~ 21030496 (+) True G116538
TU157061 lncRNA upstream 24808 21008040 ~ 21028982 (+) True G116529
TU157060 lncRNA upstream 44574 20949004 ~ 21009216 (+) False G116529
TU157036 lncRNA upstream 172794 20880692 ~ 20880996 (+) True G116514
TU157029 lncRNA upstream 225555 20827876 ~ 20828235 (+) True G116507
TU157136 lncRNA downstream 69858 21129608 ~ 21134012 (+) True G116583
TU157170 lncRNA downstream 183891 21243641 ~ 21244393 (+) True G116616
TU157251 lncRNA downstream 211001 21270751 ~ 21326263 (+) True G116657
TU157330 lncRNA downstream 394580 21454330 ~ 21500394 (+) True G116723
TU157363 lncRNA downstream 554350 21614100 ~ 21662470 (+) True G116746
XM_039814554.1 mRNA upstream 2448 21048354 ~ 21051342 (+) True iba57
XM_039814553.1 mRNA upstream 8226 21026500 ~ 21045564 (+) False gjc2
XM_039814552.1 mRNA upstream 8226 21039035 ~ 21045564 (+) True gjc2
XM_039814545.1 mRNA upstream 34465 21016902 ~ 21019325 (+) True LOC120567629
XM_039816305.1 mRNA upstream 70181 20935435 ~ 20983609 (+) True pth1r
XM_039814767.1 mRNA downstream 103970 21163720 ~ 21178831 (+) True wnt3a
XM_039815365.1 mRNA downstream 132548 21192298 ~ 21195757 (+) True arf1
XM_039815366.1 mRNA downstream 132656 21192406 ~ 21195757 (+) False arf1
XM_039815362.1 mRNA downstream 140967 21200717 ~ 21208684 (+) True guk1a
XM_039815364.1 mRNA downstream 141935 21201685 ~ 21208684 (+) False guk1a
TU157037 other upstream 138502 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 678157 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1536845 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2035064 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2379728 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 811203 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1548314 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1581760 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2617329 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2791129 23850879 ~ 23855157 (+) True G117319

Expression Profile