RNA id: XM_039814552.1


Basic Information

Item Value
RNA id XM_039814552.1
length 4190
RNA type mRNA
GC content 0.41
exon number 2
gene id gjc2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21026500 ~ 21045564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGTTGCACATGAGCATTGGGGGAGGTTGACTGTGTTGCGATTAACACGCTCCCTCAGCTGGGTGTTCATTTCAATCTGCAGTACGATATCCTCAAGTCTGAACCCTTGGATGAGGGTCACTTGCCAGAGGAGGATTTTTTTCTGCCTCTCTGTTTTTTATACTTCCTTCTTGGGCAGAAGGCTGGTGTAATAGAAACCAGACACAAGCCAGAATGTGAGGCATTCACAGCGGCGAGACCTCACTGCTTCATAGAATGGGAAAACGGAATAAATAGAAAGTCTAGTCTGATAAGTTCCATTAttgctttttcatttttgcCATTCTGGAAGTTATTAATAAGACGGAAAAGGCCAGGACATTAGGATGGAAGTGGAATTCAATGGATCAGACTGTTCAGGGGATATCTAGAGAGGGCACAGGAGACCTTCAGGATGGGAAATGCATGTACAACTTTTCCAGATTCTAGTTGAAAAGCTTGTTAGAGCAACATGAGCTGGAGCTTTCTAACTCGTCTCCTGGAAGAGATCCACAACCACTCCACCTTTGTGGGGAAAGTGTGGCTGACTGTGCTCATCATCTTCCGCATTGTGCTCACAGCGGTTGGAGGCGAGTCTATCTACTCGGACGAGCAGACCAAGTTCACCTGCAACACCAAGCAGCCAGGTTGTGACAACGTATGCTATGATGCCTTTGCCCCGCTCTCGCACGTCCGCTTCTGGGTCTTCCAGATCATCATGATCTCCACTCCTTCTATTATGTACATGGGTTACGCCATCCACAAGATAGCCCGAAGTACAGAGTTGGATCGCAGGAAGCAACTCAGGCTCCGCAAAAAgtcttctcctctctccagaTGGAGAGAAAGCCACCATCTGGAGGATGTCttagaggaggatgaagatgacgaTGCTGAGCCCATGATCTATGAGGATACACTGGAGGTGCAGGAGGCCAAGCCCGTACCAGTGAGCAGCACAAGCAAAGACCCACCAAAACATGATGGCCGCCGAAGAATTATGCAAGAAGGCCTGATGAGAATCTATGTTCTTCAGCTCATGTCGCGAGCTATTTTTGAAATCGCTTTCCTTGCAGGACAGTATCTCCTCTATGGTTTTCAAGTTAGTCCTTCATATGTATGTAACAGGGTCCCCTGTCCACACCGAGTGGACTGTTTCATCTCCAGGCCCACAGAGAAAACaatcttcctcctcatcatgTATGTGGTAAGCTGTCTTTGTCTAGTGCTAAATGTGTGTGAGATGCTTCACTTGGGAATTGGCACTTTTCGGGACACCCTTCGCATGAAGAGGAACGGCCGACGGACGTCCTACGGCTACCCGTTTTCTCGAAACATCCCAGCCTCTCCTCCGGGGTACAACCTTGTGATGAAGACAGACAAACCTAGCAGGATCCCCAACAGCCTCATTACCCACGAGCAGAACATGGCCAATGTGGCCCAGGAGCAGCAGTGCACCAGCCCAGATGAGAACATCCCTTCTGATTTGGTAAGCCTACACCGGCACCTACGGGTTGCCCAAGAACAGCTCGATATGGCCTTTCAAACATAtcaaaccaaaaacaaccaacaaACCTCCAGAACCAGCAGTCCTGTATCTGGGGGTACAATGGCAGAGCAAAATCGCGTCAATACAGTCCAGGAGAAACAAGGAGCAAGGCCGAAATCAGCTACAGAGAAGGCGGCAACCATTGTTAAAAATGGAAAGACCTCTGTCTGGATCTAGAGATAAATCTAATTTAGTAAATTAACAGTAAAAAACGGAGGTCTCCAGGACTCCATTGTGACACAGCtggaggaagtgtgtgtgtgtgtgcgtgtgattgAGAGATGGGACTTTGGACAATAACAATTGACAATTTCAATCAATCTAGCTGAAGAAGTACGGCACAAAGTTTAcgaaaatattaaaaaagacaCATGAGGAAATTATCAAATCCAGTATATCAAGATTCTTCTTTGTTACTGTAGTGCATTATTCTGTGCTTGCCGTAGCTTCTGGACATGGTTTACATGTGCTTATTTAGTTAAACATCTCTAATTCCaactaaaatgtcaaagtataaaCATACTGCTTCGAGCTATTTATCTGTTCTACCCTTGACTGCCGCTGAACTGgattaatcaaaaaaaaaaatctaactctGTAAGTGTGTGATTGTACCCTTGATCCAAATTAGAAAACGCAGTGAAAAACACCGTACAAATGCACAATGACTCATTTCTGAGGAATGATGATTATCGTTGGAAAGATGCATGTTTAATATTTGGGAAAGTATTTTTGGATGCAGAACGGATGCTGAAAGCAGAttcaatgtgaaatattttgataAAGATAATGAAACAGGGCTGTGTCACTGCAGGCTCTCCCAGTCAACATCTGATCAGTGTGATGATCTTCAGTCATTGCGTGCAAAGCCTTTATCTATTTTATATTTTCCAAAGCCTTTCAGTGTCACATTAGAAGGGAAAGAGGTAGGTGAACAGAGAATCAGATTATTTTCTAAACTAAATACTGATTTGCTGCAATCTGAAGCAGATGATGCATGCTTTACAAATGGGAACATACAGTAGAGACTACAGTAGAAACCCCATCCTTAGCTATTCAGTTAGCGCTACATTTATCTTATGTTTAGGCATGTTAGTTCTTGAAAAAGACCGTTTCAGTTTTTCTGTCATTGAAGCATAAATTGGTTTCTGAGTAATATTTAATCCTGCCTTCAATGTTGTCATAATTCAAAGTGCCTCAAACTTTTAAAGACTGTTCtcatattttattcattaagaaataaaattatttgAAAGGTCTGATTTCTTGCTTTGTAATGCATCTGCCTCTCTGCCTTGTCACACTAATAGCAATAGTGTGTTTTTGAAACTGCAAAGTGAAacgtttttattgaaatgtatttCAAGGTTGGAAGCTTGCAATAAAGTTTTATTGTTACAACAAATGTGTCTCATATGTTGTAACAAGAAAACTATCCGATCAAAGCCTAaacaaaatacataaacaatTAGTCAAATTGTAAATGACTAATTTATACAAACTGATGCTGGGATGAGATGTTGAGATTCTTCTGTTATACTAATCACAACAAATGTGTCTTAAAAATACACTCACGGGCCATTTACAGGTTGGATCCCCTTTTTGCCTTCacagtacagtgaactcattgtcatgttcaagaaaccagtTTGAGATGATTTAAGCTTTGTAACATGTTGcgttatcctgctggaagtagccattaGAAGAGGGGTAGACACTGTAATCATAAAGAGATAGACATGGTCAGTAACAATACTCACGTAGGCTGTGCTCAATTATTACTAATGGGCCCAACGTTTGCTTCCCCATTCTGATGCTTGGTTTGAACTTCAGCAGTTCGCCTGCATGTCTACATGCATAAATGCATTGAGTTTCTGCCACGTGATTGGCTGATTACATATTTTCATTAACAAGTCGTTAAACAGGTGTACCTTATGAAGTGGCCGGAGAGTGTATGTACTCTAAGAAGAATTTTTAAATGTATGGGGCAGCAAACTGTAATGAGAAGAATGGTATAAagttttatggaaaataatggGTGCAGGAGGGGCATATTGTTTTATAACCTACAGAATCACACAGCATTTTTATTCTCAAATATGGGACAATACCATAAAAAGGGTTCTTTTCCAGATTCAGCTGCAgcaataagaaaataaaaacatttaaaaagatttaCGATTTACCTTTGGAGACAAACCCATTTACGTATTCATTATGTATCCATTATTTATTGGATAAGTAGCATCAGATGTGGACTGCCACTtagaacaaacaaacagaaccTACATTGGAGCAGCTCATTGTATCAGCAACCCCCACCACCAATCCACAAAACGCAATCTTAAAAATGACTAAATTATCTCCATACTCACAAATTATCACTGTATTTCAAGAGGTACAGGCAACCTATGAATATACTGAATATATCTAAAGTTGACACAATTTCCTCAATCTCCGCGCCAATGAATCAAGTTGCACTCCACACCTGCAGCTATTTAAGAAATTGTTTAACAGAGAGAACAATCTGTGTTTGTCCAAACTTTAGCAAAAGACCTCATGTCAAATTACAATGAGcttgtttttcaaaaaataaaatattggaGAGCTGCTTCtta

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07616 GJC1, GJA7, CX45; gap junction gamma-1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157070 lncRNA upstream 8539 21021631 ~ 21030496 (+) True G116538
TU157061 lncRNA upstream 10053 21008040 ~ 21028982 (+) True G116529
TU157060 lncRNA upstream 29819 20949004 ~ 21009216 (+) False G116529
TU157036 lncRNA upstream 158039 20880692 ~ 20880996 (+) True G116514
TU157029 lncRNA upstream 210800 20827876 ~ 20828235 (+) True G116507
TU157136 lncRNA downstream 84044 21129608 ~ 21134012 (+) True G116583
TU157170 lncRNA downstream 198077 21243641 ~ 21244393 (+) True G116616
TU157251 lncRNA downstream 225187 21270751 ~ 21326263 (+) True G116657
TU157330 lncRNA downstream 408766 21454330 ~ 21500394 (+) True G116723
TU157363 lncRNA downstream 568536 21614100 ~ 21662470 (+) True G116746
XM_039814545.1 mRNA upstream 19710 21016902 ~ 21019325 (+) True LOC120567629
XM_039816305.1 mRNA upstream 55426 20935435 ~ 20983609 (+) True pth1r
XM_039816647.1 mRNA upstream 123713 20882617 ~ 20915322 (+) True LOC120568904
XM_039814554.1 mRNA downstream 2790 21048354 ~ 21051342 (+) True iba57
XM_039814549.1 mRNA downstream 7817 21053381 ~ 21059750 (+) False snap47
XM_039814548.1 mRNA downstream 8226 21053790 ~ 21059750 (+) False snap47
XM_039814550.1 mRNA downstream 8317 21053881 ~ 21059750 (+) True snap47
XM_039814767.1 mRNA downstream 118156 21163720 ~ 21178831 (+) True wnt3a
TU157037 other upstream 123747 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 663402 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1522090 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2020309 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2364973 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 825389 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1562500 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1595946 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2631515 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2805315 23850879 ~ 23855157 (+) True G117319

Expression Profile