RNA id: XM_039814558.1


Basic Information

Item Value
RNA id XM_039814558.1
length 1935
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC120567636
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36501801 ~ 36560647 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAGTCCTTGGATGTCAGGATGGAtggacaaagaagaagaagaagagaagatcAGAGAAGTGCTGCAGTCAGAGGACAGTGGGCCAGTAAAACAGAATATATTCTGGTTGTTGCAGGAAATGTGGTCGGCCTGGGCAACGTGTGGAGATTTCCTTACCTCTGCTACAAGAACGGTGGAGGGGCCTTTCTGGTGCCGTATAGTCTGTTAGCTGTGGTGTGTGGGATACCTCTGTTCCTGTTGGAGACTTCACTTGGTCAGTTCACCCAGGAAGGATTCATCACCTGTTGGGGGAAGTTGTGTCCACTGGCACAGGGAATTGGATATGGATGTTTCATGATGAAACTTTACGACTTCAGCTACATTTTAGTCCAAGTCTGGGCTCTCTTCTACCTGGTGTTCTCATGTAGATCCCAGCTGCCCTGGGCCAGCTGTGACAACACCTGGAACACGGCTAACTGCCTTGGTCTTCAGACTTTTAATTCATCTAATGTGACTGCAAAGCGGACCAACACCACCTCTGCTGCAACCGAGTTCTGGGAACGGCGTGTGCTGGGCGTGTCTGGAGGCATTGAGGAGCTGGGCAGTGTGAGATGGGAGCTGGCTTTGTGTCTTCTGGCCTGCTGGGTGATCTGCTACTTAAGCATCTGGAAAGGTGTCAGATCTTCTGGAAAGgtGGCGTATTTCACAGCTACATTCCCCTATGTGATGCTCCTGGTCCTACTCATCAGGGGCCTGACTCTACCGGGAGCTTGGGACGGGATCTACTTTTACCTGTATCCAGATCTGAACCGCCTGGCTAACCTTGAGGTCTGGCTAGAGGCAGGATCCCAAATATTCTTCTCCTACAGCTTGACTATAGGGACTCTGAACGTTCTGGGCAGCTATAATAACTACAACAACAATTGTTACAAGGACTGCTTTTGGCTCTGTCTGCTGAACAGTGGGACCAGTTTTGTTGCTGGATTTGTCGTCTTCTCTGTACTTGGATTCATGGCTCAGAAACAAGGTGTTAGTGTTGACACTGTGGCTGAGTCAGGTCCAGGTTTGGCCTTCATTGCTTACCCTCAGGCAACAGCTCTGATGCCTTTTCCACAGTTCTGGACTGTCTGCTTCTTCCTGATGCTCATTCTGCTGACTGTCGACACGCATTTTGTGACAGTAGAGTGTGTTATCACCTCTGTAAGCGACTTGTTTCCGAAGCTGTTACGTGCATCACTGAAGCACGAGATCTTTGTCCTTGTCATCTGTTCGTCCTTCTTCCTCATGCACCTGACCCTGGTGACTGAGGGGGGAATTTACATATTCCAGCTAATTGATTATTACGGTTGTACCAGAGCCTGTCACTATTTTATGGCTGTATGTCAATGCCTGGCTTTGGGATGGATTTATGGTGCTGACCGCATATTTAACATCATTAAGGACATGACAGGACAGAGACCATCAGTTTTCTTCAAACTATGCTGGAATTACATCGTCCCTCTGCTGTCACTGAGTTCCTTTATCCTGTACCTGGTTGATTACCAAAACATAAGGATCAATGACTGGTACGTTTACCCTGACTGGGCATACGCACTAGGATGGGTCATGACCCTCTCCTCTGTTCTCATGGTGCCACTGTGGGCAGCTGGACAGATGTGTTTGACAGCAGGAACCTTCAGACAGcgTTTGTCCATTCTTTGTCGTCCTGCCAACGATGCAGCTTTGCAGAAGGAAAGCGAAAAActgaaagaggaggaggggatggTCGAACTCAGGGCGTCTGCAGTGACGTCTGAACTGCAAAGTTCCATTAACTAGACATCACAGCGCTCATATGAGCTTCTTGCAATAAATGTCGTGTAACTCCGAGATTTCAGTGATACTAAGCTCACATTACTGCGTAAATgacaaaatgaatgaattattttttttgatgAATAGGCCATTTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162478 lncRNA downstream 97018 36404557 ~ 36404783 (-) True G120715
TU162470 lncRNA downstream 127016 36374498 ~ 36374785 (-) True G120707
TU162464 lncRNA downstream 287647 36213917 ~ 36214154 (-) True G120701
TU162454 lncRNA downstream 312674 36188879 ~ 36189127 (-) True G120691
TU162425 lncRNA downstream 410458 36090825 ~ 36091343 (-) True G120665
TU162527 lncRNA upstream 7214 36567861 ~ 36568187 (-) True G120748
TU162545 lncRNA upstream 59189 36619836 ~ 36622411 (-) True G120762
TU162561 lncRNA upstream 143489 36704136 ~ 36705635 (-) True G120775
TU162570 lncRNA upstream 148648 36709295 ~ 36710780 (-) False LOC120567714
TU162571 lncRNA upstream 148648 36709295 ~ 36711018 (-) True LOC120567714
XM_039814680.1 mRNA downstream 20481 36465612 ~ 36481320 (-) True LOC120567712
XM_039816408.1 mRNA downstream 156275 36143287 ~ 36345526 (-) True LOC120568723
XM_039814679.1 mRNA downstream 537747 35962591 ~ 35964054 (-) True LOC120567710
XM_039816952.1 mRNA downstream 568049 35928630 ~ 35933752 (-) False LOC120569092
XM_039816951.1 mRNA downstream 568587 35928630 ~ 35933214 (-) True LOC120569092
XM_039814683.1 mRNA upstream 149462 36710109 ~ 36737136 (-) False LOC120567714
XM_039816267.1 mRNA upstream 604201 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA upstream 604201 37164848 ~ 37204970 (-) True LOC120568634
XM_039814684.1 mRNA upstream 685576 37246223 ~ 37288374 (-) True LOC120567715
XM_039815708.1 mRNA upstream 736457 37297104 ~ 37331410 (-) False LOC120568299
TU162164 other downstream 1487587 35012408 ~ 35014214 (-) False LOC120567704
TU162119 other downstream 1605888 34895579 ~ 34895913 (-) True G120390
unassigned_transcript_566 other downstream 1733287 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 2097788 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 2272751 34228626 ~ 34229050 (-) True G120168
TU162546 other upstream 150563 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 439170 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 443313 37003960 ~ 37004042 (-) True trnal-caa_5
unassigned_transcript_584 other upstream 443954 37004601 ~ 37004683 (-) True trnal-uaa_11
unassigned_transcript_585 other upstream 477864 37038511 ~ 37038593 (-) True trnal-caa_6

Expression Profile