RNA id: XM_039814563.1


Basic Information

Item Value
RNA id XM_039814563.1
length 3473
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120567642
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14709909 ~ 14715157 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACGATGTGTAAAATGTAACATTCTCGGGGATCTGTTAGTTGTGACTGGAGATTCAACTGCCAGACCTGTGCAGTGGATCCAGAAAGATGTTGTTGACAGTCTGCAGGGTGACGGAAGTTGCCTGCCTGCATCCTCATCAGTAAACTTATGGGTCTGTTTTACGCTGAGACTCACTAGAGTGGAGGCTTTTGGGATACTGGCCTCCATGTTAACACAGACCGGCCCCAGCGGTTATGTCCTCCACCTACATGTCAACATCCGCTGGTTGTGGTGGTGATGCTGCAGCTGCCATGGCGACGCAGGCGTCTGAGCAGGCTCTGCTGGCCTCAGACCGCTACGCCAGACTCATCCTGGCCCAGATGAACAAGATGCGGCTCCGCACCGATTTCTGTGATGTGGGGCTGAAGGTTGGCAGCAGGGTCTTCAGGGTCCACCGACTGGTGCTTGCTGCTAGCAGCCCTTACTTCTCCGCTCTGTTCTCCGGGGGAATGAGGGAGGCGGATAAAGAGGAGGTGCAGATCCTTGGAGTGGAGACTGAAGTCTTTGAGGTTTTGCTGGACTTCATATACACAGGCGTGATCAGTGTTACAGTGGAGAACGTCCAGGAGCTGATGGTGGCAGCAGACATGCTGCAGCTGAACGAGGTGGTGTCTATCTGTGGAGAGTTTCTCAAGGGCCACATGGACCCGTCCAACTGTGTGGGCATCTTTCAGTTCCTGGAGCAGATTGCCTGCATGGACATGCTGGAGGTTACTGAGAACTACATCCAAGTTCACTTTCTGGAGGTGTGTGTCACCGATGAGTTCAGGGGCCTGTCCAAGGATCAGCTGGTGAGGCTGCTAAGAAGCGAAGAGCTGAGAATTGAGGATGAGTACCAGGTATTCACTGCAGCCATGGACTGGGTACTCCAAGATGTGGCAAAGAGGAAAAAACACGTAGTGGAAGTGTTGGAACCAGTCCGCTTCCCTCTGCTATCCCCACAGAGACTGTTCAAGTATATAGAGGGTATTACAGATTTCAGCCTGCGGGTGGCACTGCAGACTCTGCTGAAGGAATACACTGAAGTCACAAAGTCTCCAAAAGAAAATAAGATGTACAGTCAGCTGCAACCAGCCAAGATGAGACCCAGAAGAAAAGCCAGGAAATACCTCTATGCCATAGGAGGCTACACTCGGCTGCAGGGCGGCCGCTGGAGTGACAGTCGGGCATTGAGCTGTGTGGAGCGCTTTGACACCTTTAACCAGTACTGGACCACCGTGTCATCACTGCACCAGGCCCGCAGCGGGTTGGGGGTCGCGGTACTTGAAGGAATGATCTATGTGGTAGGAGGGGAGAAAGACTCAATGATTTTTGACTGCACTGAGCGATACGACCCAGTGACCAAGCAGTGGGCCGCTGTGGCATCTCTGAACTTTCCGCGCTGTGGAGTTGGCGTCTGTCCCTGCCACGGAGCTCTGTATGCACTTGGTGGTTGGATTGGCTCTGAGATTGGGAAAACCATGGAGCGGTATGACCCAGAGGAGAACAAGTGGGAGGTCATCGGCAGCATGGCAGTTCCTCGATACTACTTTGGCTGCTGTGAGCTACAAGGGTTTATTTACGTGATTGGAGGAATAAGTGACGAAGGAATGGAGCTGCGTTCAGCCGAGGTGTATGACCCTATCTCCCGCCGATGGAGCGCCCTGCCCGTCATGGTCACACGTCGAGCCTATGTGGGCGTCGCCTGTCTCAATAACTGCATTTACGCGGTGGGCGGCTGGAACGAGGCACTGGGTGCACTGGAGACGGTGGAGAAGTACTGCCCAGAAGAGGAGAAATGGGTTGAAGTGGCTTCGATGTCTACTGCTCGTGCAGGCGTGTCAGTGTCAGCAGTTAACGGGCTGCTGTACGCCGTCGGTGGCAGGGCCGCCAGCAGAGACTTCTCTGCCCCGGTGACAGTGGACTCTGTGGAAATCTATGACCCTCACCTGGATACCTGGACTGAAGTTGGAAACATGATCACCAGCCGCTGTGACGGCGGGCTGGCTGTGCTCTGATAGCCAGTATAATTTTCCAATTGTGAGTGTCCATATCAGCACGTGAATCATCCCAAAACTGCATAAAGTGAAGAACAGCTGCACCTTAAGAAACACAAACGTATGTTTCTGTCTCAAGTAGGCTTTCACGTGATCATATATGTTATTTATACATGGATTagacatgtttttcttttgtatttgtcCACAACATTTGACATTTATTGAACACATGACAGCAGATCTAAAACTGGAAAACTGCCAAAACTGCTCATCTGTGTCTCTATTTTCAATTCACGGAATACTTTTACAAGAGTATAAGTGAAAAAAGACTTATTTTCCTCTCATGTATTTGAAGACAAAGCTATCCTTGAGATAAGGATAATTTCACAGCGGAGGAACTATATTTTGGATGGACCAGTTTTTTTCCTTTGGGGAACACTGCTAACAGTTCTTTTTTGCTTTCTCTTTATTTTCCCTTAAAGAAATGTTTGAGATGAGTGCATTGCTACTTGGAAGATGTATCAAACCACTTGAGCCTATTTAATAATGGAACCAAAGTTCCATGTAAAGTGATTCCTGTAAATAATTATAAACTTGAACAGCACACCACTGTTGGATGATGTTGGAGCTCATCACATTTGCGAAGCAGTTGCACAGTAACAGTATTTCCTATCATGTACTGTTATTCCTTTGCAAACGGCAgaatattaatgttaaacagtaataacattttattggTCGCTTTTCAGACTTAAACATATGCGCGTGCTGGGTTTAAAATGAACCTGCATTACCTCTCTCTTCATTTAAGATATTTGAAATGTAATAACTTAAAACATGGCTCCAGAGGACCCTCCACTGTAAACATCACACTGattttacacatacatacaaaaaaactCTGAGTTGACTGTATACGTTTACAAAAAAGATGTTCTGCACTGTGCAAACAAGACAATATGGAATCACTTACCTCCAGCTCTGCCACTAAACTCAGCACTCATGGATTTACACTGAACATTTATATTGAATGTTTATCTCCAGTAAAACTCATTGTGATTAATGTATGACCTTATAGGTTGTGATGTGTGAAAACTaacatttttacatattttaataaatgttaaGGTCTCTATCATATACTGTAGACTCCTCAGAATAGAGTCATAtaagaggcagggagagagatcGGTGAGGATGCCTTGTAAAAGTTAACATTAATAACATAGAACTGTACTATACTGACTTGTATCAGTCTGGAGTTACACAACAATGGAAAGGAAAGGTATGCATATAATCCCAATGTTTATCCATTGTCTCCAATTTGCACATGTAAAATCGCCATATTCAAACACATTTCAATAAGGGTACTTTTTGTCTGTACTTGTCACAGCAAAGAATGTGATTCTACAAATGTTTTCtgataaatgataaatgttGAATTTCAAAGTC

Function

GO: NA

KEGG:

id description
K13956 IPP, KLHL27; actin-binding protein IPP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154623 lncRNA downstream 15952 14693632 ~ 14693957 (-) True G114636
TU154619 lncRNA downstream 19843 14689457 ~ 14690066 (-) True G114633
XR_005640749.1 lncRNA downstream 91685 14614432 ~ 14618224 (-) False LOC120568687
TU154601 lncRNA downstream 91745 14613613 ~ 14618164 (-) True LOC120568687
TU154511 lncRNA downstream 192016 14517476 ~ 14517893 (-) True G114544
TU154667 lncRNA upstream 36088 14751245 ~ 14751528 (-) True G114661
XR_005640836.1 lncRNA upstream 65119 14780276 ~ 14782472 (-) True LOC120569096
XR_005640751.1 lncRNA upstream 239421 14954578 ~ 14958403 (-) True LOC120568695
TU154756 lncRNA upstream 285987 15001144 ~ 15003045 (-) True G114733
TU154790 lncRNA upstream 360984 15076141 ~ 15081980 (-) True G114752
XM_039814570.1 mRNA downstream 1579 14694449 ~ 14708330 (-) False gpbp1l1
XM_039814569.1 mRNA downstream 1664 14694449 ~ 14708245 (-) False gpbp1l1
XM_039814575.1 mRNA downstream 1665 14694449 ~ 14708244 (-) False gpbp1l1
XM_039814576.1 mRNA downstream 1665 14694449 ~ 14708244 (-) False gpbp1l1
XM_039814577.1 mRNA downstream 1666 14694449 ~ 14708243 (-) False gpbp1l1
XM_039814579.1 mRNA upstream 5124 14720281 ~ 14727430 (-) True LOC120567646
XM_039816966.1 mRNA upstream 82957 14798114 ~ 14809624 (-) False serbp1b
XM_039816964.1 mRNA upstream 82957 14798114 ~ 14809624 (-) False serbp1b
XM_039816963.1 mRNA upstream 82957 14798114 ~ 14809624 (-) True serbp1b
XM_039816965.1 mRNA upstream 82957 14798114 ~ 14809623 (-) False serbp1b
TU154602 other downstream 94137 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 1621346 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 1941284 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 2107000 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 2491642 12218062 ~ 12218267 (-) True G113805
TU154687 other upstream 80761 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 575029 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 575029 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 696005 15411162 ~ 15411347 (-) True LOC120569139
XR_005640843.1 other upstream 696506 15411663 ~ 15411840 (-) True LOC120569141

Expression Profile