RNA id: XM_039814565.1


Basic Information

Item Value
RNA id XM_039814565.1
length 1862
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC120567643
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14687762 ~ 14692836 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAAGGGGTAAGAACATTTCGCGCCAAATTGAAACAACGGAGCAGTCACTGACACACTCTGAGAGGCAGGAGGGACGACGTAAGACACAAATCAACGTTTCGGTCGTCATTTCTCGGACAAGCTAACATGGAGGAGGCCAACAAACTAATCGGCACGGGCAAGAAGCACCTGGTGATGGGGAAGGTGGTGGAGGCAGTGAGCGCCCTGCAGGAGGCCTGCGGCATGCTagCTAAAAAGTATGGAGACACAGCAGATGAGTGTGGAGAGGCTTTCTTCTGGTGTGGTAAAGCGCTGCTGGATTTGGCACGGATGGAGAACTCTGTCCTAGGTAATGCTCTGGAAGGAGTAccggaggatgaggatgaagaaAAACCCAAGGACTCAAACGTTGACAGCACAGAAAACATTGATGAAAAGACTAGAGATGAGCTGAGAGTTCAGGTGTATGATGCCAtggcagagaaaaaaaatgaagactCTGACAAGGTTGAAGGGAATAAGGCTGAAGACGAAGGGAATAAGGCTGAAGACGAAGGGAATAAGGCTGAAGACGAAGGGAATAAGGCTGAAGACAAAGGGAATAAGGCTGAAGACAAAGGGAATAAGGCTGAAGACAAAGGGAATAAGGCTGAAGACCAAGAGAAGCGTGACGTAGTAAAGGCTGAGAGTTGTGATGAGCAGCATGCCAGTAAAAAAGATGAGAAAAAGAACAGCGAGGTTAATGGAAGCAAATCTGATGAAAGTAAAGACGAGGTAGAAAATGACAAGGAAGCCCAGAAAGAATCGGGAGATAAGGAAGAGAAAACAGAAgatgaggaggaggaggaagaagaggaagaagactgTGATGTAGAAATGGAGGGCGATGCAGAAGAGCAAGGAGATGGCGCTGCTGAGAAGGACAGTGATGACGAAGAGGAGGTGGGAAACCTGCAGCTCGCCTGGGAGATGTTGGAAGTAGCTAAAGTCATCTACAAAAGgaaagagGCTAAGGAGGATCAACTCATGGCAGCCCAGACTCACTTGAAACTGGGCGAAGTTTCTTCTGAATCAGGAAATTACACCCAGGCGTTGGAGGATTTCCAGGAGTGTCTGAAGCTGCAGGTGAAGCACCTGGACTCAGACAGCCGTCTGCTTGCTGAGACTCACTACCAGCTAGGTCTGACCTACAGCTTGGATCTCCAGTACAGCCAGGCCATCGAGGAGCTGCAGAGCTCCATCTCTGTCATCAAGAGCAGGCTGGACAAACTGCAGGAGCTGCTCGACAAGGCCGAGGGCCCCGAGGCGCTGCCAGATGAGAGGAAGGAGATGGAGGAGCTGAAGGCTCTGCTGCCAGAGATCCAGGACAAGGTGGAGGATGCCACAGAGAGTCTGAAAGGTGCACTGGATGGAGGCTCTACTTCCTCTGCATTCCCTGGCTCCACTGTGCAGAATGGAGACTCCTCATCCAGCTCAaagATTAACAGCACGTCAACCAATGAAGTCAGCTCTACCAACGAACACGCCTCTACAGCTCCAGTCTCTAACATCTCCCACCTGGTCAGGAAGAAGaggaaacCAGAGGAGAGTCCAGTGAAGGAGGGCGTTAAGAAGGTGAAGCAGAATGACGGTCAGACTAACGCTGTTCACAAAGCCAACGGAGACACTAATGGACACACCGACAGTACGGAAGTCAAAAGtCAGTGAAGCTGGACTCCTCCTGGTTTTTGCCTCCACCAAAGAAGAGATTCGCCAACAGGCCGAGCCCTTACTGTCACTACACTTGTTTGCTATGTGTATCTTTTTCTATACCTGTTGTGATGTTAGTCTTTATTCACATGTGTAAcctataaaatttaataaagaaCATTATTTGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154529 lncRNA upstream 61005 14626167 ~ 14626770 (+) True G114561
TU154518 lncRNA upstream 127098 14558365 ~ 14560677 (+) True G114550
TU154433 lncRNA upstream 346434 14337822 ~ 14341341 (+) True G114488
TU154334 lncRNA upstream 373142 14314303 ~ 14314633 (+) True G114429
TU154333 lncRNA upstream 373760 14313602 ~ 14314015 (+) True G114428
TU154563 lncRNA downstream 730 14693566 ~ 14693902 (+) True G114585
TU154653 lncRNA downstream 118826 14811662 ~ 14812209 (+) True G114650
TU154747 lncRNA downstream 298152 14990988 ~ 14993083 (+) False rgs18
TU154767 lncRNA downstream 329441 15022277 ~ 15025102 (+) False ro60
TU154769 lncRNA downstream 372254 15065090 ~ 15065393 (+) True G114745
XM_039815678.1 mRNA upstream 13486 14667381 ~ 14674289 (+) False aldh9a1b
XM_039815676.1 mRNA upstream 13486 14667439 ~ 14674289 (+) True aldh9a1b
XM_039815677.1 mRNA upstream 13486 14667439 ~ 14674289 (+) False aldh9a1b
XM_039816352.1 mRNA upstream 68899 14576354 ~ 14618876 (+) True slc1a7a
XM_039814713.1 mRNA upstream 136744 14549367 ~ 14551031 (+) True tmem125b
XM_039814578.1 mRNA downstream 15677 14708513 ~ 14709821 (+) True LOC120567645
XM_039816738.1 mRNA downstream 60106 14752942 ~ 14774303 (+) True sgip1b
XM_039816739.1 mRNA downstream 60106 14752942 ~ 14774302 (+) False sgip1b
XM_039816958.1 mRNA downstream 85120 14777956 ~ 14779867 (+) False dynlt5
XM_039816960.1 mRNA downstream 85120 14777956 ~ 14779867 (+) False dynlt5
TU154338 other upstream 391782 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 392507 14287150 ~ 14295268 (+) False LOC120568245
TU154339 other upstream 392507 14292760 ~ 14295268 (+) False LOC120568245
TU154337 other upstream 396815 14288355 ~ 14290960 (+) False LOC120568245
unassigned_transcript_558 other upstream 1469565 13218139 ~ 13218210 (+) True trnae-cuc_17
TU154847 other downstream 458960 15151796 ~ 15157199 (+) True G114789
TU155017 other downstream 779907 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 827963 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 1029303 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 1029671 15722507 ~ 15722573 (+) True LOC120569146

Expression Profile