RNA id: XM_039814589.1


Basic Information

Item Value
RNA id XM_039814589.1
length 5708
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC120567653
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26000222 ~ 26046169 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTATtatgagagtgagagagatgaGAGTGAGAGAAGTACAGGAAGAGAGAAATGAAGATGTTAGTTTGTCCCATAGTGCATTGCGTCAGCGTGACCTGTGTTGAAATGACTTTGTCTATCCCAGTGGCACGTCAgcgatagacagacacacagAGGAAGTGCCTTCCCTGATGTCTGCTGCAGCTTCGACCTGCTTCTACAGCTGAAGCTCCACCCTCCGCCCCGCCTCGCTCGCTTGCCGCCACAGTAACACGAGTACAAGGACAGCGGCCACACCCACCTCGCAGCCTACGCTCCGACCTGCTCATCCATCACCATCCACTCCTCAAAGCCGGGCTCCAGCCTCAGCTCTCCCCACCGGACAGCCCTCCACCAGCCCAACAGCCTTACCACAGCAGCCCAACACACCATTAGGCCCACGCAGCATCTCACCCACCTTGCCTTGGACGTTCGCCTTCAGCCCTCTAAGCCTCCACTCGGTCCTCAGTGTCCTTAACCTTCCTGTAGCAGGCTACACCCAGACTATCGCCTCTGTTGCCTGCTTCACTGCACCTAACCAGAGGGCTCTCTGTTTGGCCCGCTCATCTGTTTGCCTCCTTGGCTTGTGAATGTTGTAAGTGAGACCGTTCAGCAAGAAACACTGAGAGAGAAAAGTCAGGCAGAGAGCGGCAACTTCATTGCTAGTCGTCTCCTGGATATAAACCCTTCTTCTGTGGTTGGTTGATCCAAAAGATTATCCAATCACATTCGCCCTGCAACATTTCGCGTTGGAAAAGGAGCCCTCTCAATCGACGTCACATACACGCATCACAGACTTtaacaacaaatacacacagacaaaagaaaaacgTTAAAACACGAGAGGTACTTTATTCACGCTTGAACAGATTTCAGCtcggaataacttttgccaGCGTTTTGCCATGGCGATGAACATGGCACACATGCGTGACACAAAGTGGCTGACACTTGAGGTATgtagggagttccagagggGCACGTGCTCACGCTCGGACCAGGAGTGCAAGTTCGCTCATCCGGCCAAGAGCTGTCAGGTGGACAACGGACGGGTCATCGCTTGCTTCGACTCACTCAAGGGCCGTTGTTCCAGGGAGAACTGCAAGTACCTGCACCCTCCTGCCCACCTAAAGACCCAGCTGGAGATCAATGGCAGGAACAACTTGATCCAGCAGAAGAACATGGCCATGCTCGCCCAACAGATGCAGCTCGCCAACGCCATGATGCCTGCCACGCAGCTACCACCTATGGTGAGAGGACACACACGTATGAACACACCACAGCTGCTGCCCACGCCCATGTTCTCGATGTCGCCAGGCATGGCCTCCAAcgccagcgcagcagcagctgcagccgcAGCCTTTAATCCCTACCTGAGCCCTATGTCACCAGGCCTGATGCCCCAAGAGATAATGTCCAGCACCCCTGTCCTCATGGCCTCCAGCCCCAACGTCAACCAAGGCCCCAACTCTGCCGCTGCTGCAGCCCAGAAACTGCTGAGAACAGATAGACTTGAGGTGTGTCGGGAATATCAGAGGGGCAACTGCTCCCGGGGGGAGACCGACTGTCGCTTCGCCCACCCCTCAGACAGCACCATGATCGACACCAACGACAACACCGTCACCGTGTGCATGGACTACATCAAGGGTCGCTGCTCCCGGGAAAAGTGCAAGTACTTCCACCCGCCGGCCCATCTGCAGGCCAAAATTAAAGCTGCCCAGCACCAGGTGAACCAGGCCACAGCCGCCGCGGCCATGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGACGCAACCTTTGACCTGGGCATCACCCCTAATGTCATGGCTCAAATGCCCAAGCGGGCAGCCCTGGAGAAGGCCAACGGGGCCACTGCCATGTTTAACACCAGCATGCTCCAGTACCAACAGGCCCTGGCCAGCATGCAGTTTCAGCAGCAGGCTGCTTTCCTCCCATCAGGCTCAATATTGTGCATGACACCTGCAGGCGGCGTTGTTCCCATGATGCACGGTGGTACTCCAGCCACTGCAGCCAACACATCTGCCACAAACCCCTTCGCAACTGCCTCCACCAATCAGGACTCTTCCTTATCAAAGTTGACTACCAACGAATACATGCAATTGATTCCAATAATATCTGCAGATCATCTGAGTAGTCACAAGTACTTGACTCAAATGTAGTTCCTCTCAAGAACAATCAAATGAATGTGTGCTGGCACCGTCCAAGCCAAAAGAGTTCAGCCTTTATGTACATAGCCTTCAGAATGTCAAACAATGGGACAAGGAGGGTCTGCCATCTCTTAGCCGGTCCACGACGATGGTCTCATCGCACGTGTAAACATCAACGGTGCAACACATGATCTGTGCCATCTTCCCACATATCAATGTCAAGAAGAATTTGTTGTCAAATTCAAAGTCCAGCCGAGAGAAGAGGATATCTTGGTGCCGGGGTCAgtgtgtctctccctctgtgggAAACGTTCTCATTACACCCCTGCGTCTGACTAAATCATAGCACTCAATTTGTTCTACCTAATATCATTACCGTGCGCACACAAGGTCAAAGGCATGGTTGCATAAAAGCAACATCCAGTTTTTTcatccccttttttttctttttgttctgctttatttttttattttataattgatAGCCATATTTCATAGTTTACAAGTGTAATGCAAACATGCACCTTGAATTTCAATTGAAATCTGAAAGGCACAACGATTTAAACAGGAATTTTATTCGCCAAAAGAATTAGGCATATGTACAGTATTGTGTTTTTACGGCTACTTGTAAATGAGGGTCTTGGACGTATGAATGTTCTTGGTAAACCAACATACCTGTGTACCTTGAAAGCACAGCCAGGCTAGCTTTCCTCACCTTGTCATGTGCCATCAAGGCCATACAGCTAAAACCAGAGTGTTAtctcagcagtgttatttgtttACCAAAGTTTTGTATggtctttttttgtattgttttttttttccttttttttttttttttttacttttcatttctctaattaattcattttagaAGTGGGGTTCCCGCCAAATTTGTGTTTctaattttgatgttttttttcttttaaaatcaaaaatgtaggtttttttttcctaagTTGGTCATGCCTCTTTTCTTAGActagtgttgtttttgtgtgttgggATGAAGTTGTTGCTCAAGTCTATTGTTGACTCTAAAGCGTGGAGGGTGTAGCTTCAATCGCCATTGTGTCACCTTGTTCTCCCTCTTTCAAAGAGGTGGAGACTCTAAAGCTTCTCCAAGGAGCACTGTTGAGCCACGTACTGATGAGACTgggaatttaaaaaacaactggACCCAGAGGTCTATTAGGTCATTTAAACCACATGTGCACTTGATTGATTGTTTGTCTGGTCGCCCTGTTTTAATTGTCACAACTCATCCTAAGTGAACTTTGGCTTTTGAGGAAATACAACACATTATGTGTTTGCATTTCCAAACAAAACCTGAAGGTTCTCAGTCACTTGTAGATCTGACTACAGAAACCAAAGCACAGTTTTCCTCTCAATCATATTCACAAAGGGTTACAGAAGCATCTCTCAAGAGGCTCAGTTAAGGAACCATGTTCATCATGTTCCATACATCTGTCAATTTTTATGATCACATCCCTTTTCTGTTTTCACAGAGGTGTGTAGTGTGTCTTTACCGATTGTAATGTACCTAACAAAGCCTTAGATTACAATTACTGGGTCCCAGCCCAATCACATGTCAATCACCATGCAGGTAAAGAACACCAATGATGTTTTATAGTTCTCTCACGTGTCGCTTATGAtcgtttttttgttctttctctCAATGTAAAAGTAACAATTACTCTCTTAAATTTCATTGAACTTCTGTGTTATGTACTACTTAAGGATTTGAATCTATTTGAGGTATGTAGttgtagatttttttctttttttttgccttacTATATATTACTTGACAACATTGATATAGCCGTTGTAGATTTTGAGATAGATGACATTCATAACTTTTTCAAACCATATAAATGATAATGTGTTGAGTCAGTTTTAAATATCCATTTCATCCATATAGCTGGATGTCTTTTTCAGATGATGTTACATTATCAGTTAATTTTGTTGATGAAAGACTTTTTTGATACAAGGAATGAGATCAATTAATTTGCTGCCACTGCAGCATCTCTgagcagacaaaaaaaagagaaaactaaTCTTTTAACCAACTTCAATTTTCCTTGTAACATGTCGCGATcatgtttgaaaatatattGTATTGAAAAATAGATTGTCCATGTTTTAGAGTAAAAATTATTTTCTACTGTATCCATTTCAAAAAGATATGTACTTATGTTTGAATATTTCTTAAGTTTGCCCTGAATGTCAGGCCAAAACGAGCGAGTGAGATTGACGGGTCTCTGGATGTTTGGTGGATAGTGAGATTAGGAGCGAGAAAGCAAAGACTTTTCCAGACTGGAGAGGTCAGAAATGCTGCAGATGATGAGTTCTAACCTAAGGGACGAAGGTTGACTTTTTGCACTTCTGTATATAGTCAAATgaacagagaaaaaaatgtgtatcATATTGAGatattattttgaataaaaaaagatcTATAATTATAAGGAATTTTGTTAGATTAATTTAAATTCTTAAATTAGAAGACcagctaaaaaaaacattgcttgCAAAGAAGGGCACTAGTTTCTTGGCCAATGCATTCAGAGAAAGCTATGcgctttttgtcttattttatcGGTAGTATTGCCAGGGAATGTCAAAGGGGAATAGATTTCCCCATGTCATGCTAACTCCACCCCTCCTGTGGGATGACATATCCAATAATATCCATATATCATTTGTTAGACTTGGTCACGCAGTATTGCTGCTCCCATGGTACACTTGATAcataaaactttcaaaaaattgTATTCTATAATAGTTTGATTTGACTGCATGTAAAAGTACAaacatgtaaacaaaataaactgCGTAGTTATGTAAAGACAGATAACACATTCAGATTACAGAATACAcagtaatatgtttgtttgttttttcaaagtaGATAACATCCACAGTGGGGAGAAATAATacttcaaaaaaaaacaagtcatcTTACTCttgtgtgatttaaaaaaaaatattttccaagCAAAGATGTTATTTAAAGAATGATGAATAAATATTAGCACTCATCCACCCCAGATACAGAACCTTCTCATAGCCGTATAATTACAGTCGACACTGACTCACAGGACGTTGTTCCTGCTATCATAGCTGTGCACTCAGCAGGTGAAGGCTCACCATACCAAATGCTTATTTGGCAAATTAgtctttgaaatgaatgtaaCAGTCACCGGTCAACAGGTGTCTGACTCGAGGCTGCTGAGTTTAGTTGCTACAGAACCAAAGCACCATTTTTTCCTCCAAACCAGATGTTCAGTCTCCTGGCTGGAACCATGGCTTCTCTTCCCTGCTGGGGGCACGTGTACGCTTTGACTGCTTTTTACTTGTAAGTGCAACCATCAATTATGTATTTGCTAACAGTTGCCACACAATAATGTACTATTCTGTCTTCAGATCTGTTGATGCACATTTTGTTGTTGCCATAATTGACTCTGAATCTGAAATCTGAATAAAACAATATTTGATTTGCTCATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158843 lncRNA upstream 84009 25916500 ~ 25916722 (+) True G117847
TU158842 lncRNA upstream 94415 25906115 ~ 25906316 (+) True G117846
TU158841 lncRNA upstream 95600 25904913 ~ 25905131 (+) True G117845
TU158831 lncRNA upstream 111890 25880504 ~ 25888841 (+) True LOC120568898
TU158861 lncRNA downstream 3966 26050135 ~ 26050878 (+) False LOC120567655
TU158959 lncRNA downstream 12085 26058254 ~ 26065839 (+) True G117917
TU158981 lncRNA downstream 158442 26204611 ~ 26204830 (+) True G117933
TU158986 lncRNA downstream 162187 26208356 ~ 26208871 (+) True G117938
TU158990 lncRNA downstream 260520 26306689 ~ 26307634 (+) False ece2a
XM_039816731.1 mRNA upstream 28425 25968610 ~ 25972306 (+) True LOC120568964
XM_039816732.1 mRNA upstream 28425 25968610 ~ 25972306 (+) False LOC120568964
XM_039816734.1 mRNA upstream 28425 25968905 ~ 25972306 (+) False LOC120568964
XM_039816730.1 mRNA upstream 37560 25959806 ~ 25963171 (+) True scg2b
XM_039816728.1 mRNA upstream 56281 25931541 ~ 25944450 (+) True acsl3b
XM_039814613.1 mRNA downstream 2620 26048789 ~ 26051099 (+) True LOC120567655
XM_039814690.1 mRNA downstream 27202 26073371 ~ 26115398 (+) False kcnab1b
XM_039814695.1 mRNA downstream 27385 26073554 ~ 26115398 (+) False kcnab1b
XM_039814696.1 mRNA downstream 30172 26076341 ~ 26115398 (+) False kcnab1b
XM_039814693.1 mRNA downstream 30374 26076543 ~ 26115398 (+) False kcnab1b
TU158825 other upstream 170036 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 206777 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 244841 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 1046484 24950568 ~ 24954247 (+) True G117664
TU158471 other upstream 1324978 24673924 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 169558 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 349257 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 353251 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 370339 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 544661 26590830 ~ 26600072 (+) True prkab2

Expression Profile