RNA id: XM_039814615.1


Basic Information

Item Value
RNA id XM_039814615.1
length 3685
RNA type mRNA
GC content 0.52
exon number 32
gene id LOC120567656
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28042117 ~ 28077515 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagatttacaaagaatatgtttagggcatttactctaactgggacgttttgggaccgattggtggggatttgctatggacaaaatccACACGGCGATACCCTGGTAAGAGTAAatgatgtttaaccatgtatccagctcatTTCGATAGCTCACATTagtaccaaaacaagttccttcctgagactattttgcagagccaccgtctctgcacagcgctgtggagtaagatccggcaatgcaagactacatcTGGGCTAACCAGAGAGGCGTTTGGGCTGACCAGAATGACAGGGGGCACGTTTAAGCTGCCCTGCACTCTCCACCCATGTGCACACCAATGGCAGTTCCTGTTGCCCTTAAAAAGCCCatacagacagactgacacaaGTCATCTGCATGCCATGGTGAAAACagcgacagcagcagcagccgccgcCTGTGGTTGAGGGAGGCAGCTCCAAGTACAGGGGCGGGGAGGGGGGCGCAGCCGGAGCTCACATTCATTAACGACCACCGACACAACCGGGAAGCCTCCTCCGGTAGCATCACGGCGTTCACCGACACACGACCGGGGAAGATGGTCGCGGTGCACACGTCCCCGTCGGCGGAGTGGATCTGCTGTCTGGATAAAAGGCCCTCGGAGCGCTCGGGAGAGGATGTGGACATTATTCTGACCAGATTGAGAGAGGTCAAAGCCTTCCACAGGTTCCCACCTCCGCTCTTACTGCAGATCTGTGCATGTGCCTTCTATGAATGCCTGGAGAAAGGCATCAcgtTGTTTCGACAGGGGGACATAGGCACCAGCTGGTATGCAGTCCTGTCTGGTTCTCTGGatgtcaaagtgtcagaaactgCCAACCACCAGGATGCAGTCACTATCTGCACACTGGGGATCGGGACAGCGTTCGGGGAGTCCATCCTGGACAACACACCACGCCACGCTACCATTGTCAGCAGAGAGACCAGCGAGCTGCTCCGTATCGAGCAGAGGGAATTCAAGAGCCTCTGGGAGAAGTATCGTCAGAGCTTGGCTGGACTGTTGGCCCCTCCTTATGGAGCTATGGAGAGTGGATCCAACAATGACAGACTCGCAGACAAAGACAACATGAACTCGGACTCTGCAAACAAAGCTCACAACAACAAGATCTCTTCGGAGAAGCTGCAGAGAGCGGGGAAGGTTCTCCGCAACGTCATCCTGTCCAGAGCCCCACACATGATCCGAGACAGGAAGTACCACCTCAAGACATACAGACAATGCTGTGTAGGCACAGAGCTGGTGGATTGGTTGGTGCTGCAGAGTGCCTGTGTTCTCACACGCTCCCATGCTGTTGGGATGTGGCAGACACTACTAGAAGAAGGGGTGCTCAACCACGTGGACCAGGACCTGGGTTTCCAGGACAAGTACCTGTTCTACCGTTTTCTTGACGATGAGGATCAGGACACGCCGTTGCCtggtgaggaggagaagagggagagtGAGGAAGAGCTGCCAGAGACCGTCCTGTTCCTCGCTCAGATTGGCCCTGACGCACTGCTGCGCATGATCCTCAGGAAATCgcCTGGTCAGAGGACAGGGGATGACCTAGAGATCATCTATGATGAGCTGCTTCACATCAAGGCCTTAGCTCACCTCTCCAACACTGTGAAGAGGGAACTGGCGAGCGTCGTGATCTTCGAGTCACATGCAAAAGCTGGAACAGTGTTGTTCAACCAAGGAGAGGAGGGCACATCATGGTACATCATCCAGAAGGGCTCTGTCAATGTGGTTATCTACGGcaaggGTGTGGTGTGTACGCTCCACGAGGGTGACGACTTTGGGAAGTTGGCCCTGGTTACAGATTCACCTCGTGCCGCCTCCATCGTCCTGAGAGAGGACAACTGTCACTTCCTTCGTGTGGATAAGGAAGACTTCAACAGGATACTCAGGGATGTGGAAGCCAACACAGTGCGTTTGAAAGAGCATGAACAAGCTGTGCTGGTGTTAGAAAAGAGTCCTCGCGCCTCCACCCTGGGAAGCatcaaGTACACTGTGATATCAGGAACGCCAGAGAAGATTCTCGAGCACTTCCTGGAGGCCATGAGGATGGACATACATCACAGTGAACCAGACCCAGCAGTGGATGATTTTGTCCTCATGCACAGTATCTTCATGCCCAACAGCCAGCTGTGCCCTCTACTCATGGCACACTACCATGCGGCGTCTCCGCCTGGCTCTGAACAGGAGAGGTTGGAGTATGCGCTCAACAGTAAGAGGAGGGCCCTCATTCTGGCCTTGCGCTGGGCTAAAACACAAACGTACCTGCTTCAGGAGGAGCCGTGTGCGATCTCTTTCCTTGAGgaGTTGTATGGCAGCTTATCAAATGATTCTCGGGTGTTGAGAGCTTTGAAAGACTTTGTTCCTGACCTGGAGAAAGTCGTCAAATTACATTCGGAAGAAGCCAAATCCATAAAAAAGAAAACGCTAATACGACAGTTCAGCAACGGAGAGGAAAGGCTGCAGAAAAAACAGCCCATTAGGAATCATGATGAcatCCTATTGAAGGTGTACTGCGGTGAtcacacatacactactatcCGGGTTGCCGTGGCAGCAACGGGAAAAGACGTGATCAGCGCTGTGGCTGACAAACTTGGCACCACTGATGAGCTCGTGTTGGTCCACCTCAGCTCTGCAAGTGaaaaacaaatccTGAAGCCTAATGACGTTTCAGTGTTTTCCACTCTGAGCATCAACGGCCGATTATTCGCCTGTCCTCGAGACCAGctcaacagtctgACTCCCCTTCCAGACCAGGAGGGTCCCTCTGCAGGCTCCATGTCAACCTTTGAGCTGATGAGCTCTAAAGACCTGGCTTACCAAATGACCATGTATGACTGGGAGCTCTTCAGCTGTATGCATGAGCATGAGCTGCTCTACCACACGTTTGGCCGGCAGAGCTTTAGAAGAACCACGGCTAATCTGGACCTGTTTCTGCGGAGGTTCAACCAGGTTCAGCTGTGGGTGGTCACTGAGGTGTGCCTCTGCGGACAGCTCAGCAAGAGAGTCCAGCTCCTCAAGAAGTTCATCAAGATCGCTGCACACTGTCGGGAGTTTAAGAACCTGAATTCATTCTTTGCCATCATTATGGGGATGAGCAACCCTGCAGTCAGCAGACTGAGCCAGACGTGGGAGAAACTCCCCACCAAGTTTAAGAAGTTCTATGCTGAGTTTGAGAGTATGATGGACCCATCAAGAAACCACCGGTCCTACCGGCTCACTGTCACCAAACTGGAGCCGCCAATCATCCCCTTCATGCCCCTCCTTCTCAAAGACATGACATTTACACATGAGGGCAACAAGACCTTCATTGACAATATGGTCAATTTTGAGAAAATGCGTATTATAGCGAACACAATTCGGCAAGTGAGGCACTGCAGAAGCCAACCATTCAATCCCGAGATATGCCAACCCAACAAAAACCAAGCGGATGTACGGGGTTACGTTAGGAAGCTCTGCGTGATCGACAACCAGAGGGCACTGACGCAGCTCTCCTACAGGATGGAGCCTCGGCGGACATGAGCTCCAGATCTGCCACCGCCATCGCCTTTTCTATGACAACGTTTTGGTTTCTTCTCTCCGTCAATCGGTTCTGCTGACTGACAACATCCACTCCGGCCCTGTGGAGGAAACTACCCCGCCTCTCT

Function

GO: NA

KEGG:

id description
K04351 RAPGEF4, EPAC2; Rap guanine nucleotide exchange factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159713 lncRNA downstream 377405 27627886 ~ 27664712 (-) True G118504
TU159681 lncRNA downstream 432423 27579032 ~ 27609694 (-) True G118482
TU159867 lncRNA upstream 17508 28095023 ~ 28099810 (-) True G118608
TU159885 lncRNA upstream 66913 28144428 ~ 28145034 (-) True G118613
TU159884 lncRNA upstream 68855 28146370 ~ 28148257 (-) False metap1d
TU159912 lncRNA upstream 122622 28200137 ~ 28200551 (-) True G118632
TU159916 lncRNA upstream 128196 28205711 ~ 28206241 (-) True G118636
XM_039814617.1 mRNA downstream 158 28028019 ~ 28041959 (-) True LOC120567657
XM_039815857.1 mRNA downstream 321965 27717398 ~ 27720152 (-) False LOC120568371
XM_039815856.1 mRNA downstream 321966 27717398 ~ 27720151 (-) False LOC120568371
XM_039815855.1 mRNA downstream 322477 27717398 ~ 27719640 (-) True LOC120568371
XM_039815858.1 mRNA downstream 327698 27713338 ~ 27714419 (-) True LOC120568372
XM_039814619.1 mRNA upstream 26940 28104455 ~ 28134204 (-) True LOC120567660
XM_039815275.1 mRNA upstream 68756 28146271 ~ 28152770 (-) True metap1d
XM_039815280.1 mRNA upstream 92445 28169960 ~ 28185339 (-) False LOC120568081
XM_039815278.1 mRNA upstream 92445 28169960 ~ 28185339 (-) False LOC120568081
XM_039815279.1 mRNA upstream 92445 28169960 ~ 28185339 (-) False LOC120568081
TU159738 other downstream 323358 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 327727 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 366757 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 1217547 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 1376165 26661621 ~ 26665952 (-) True G118175
TU160079 other upstream 908576 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 1342864 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 1566848 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 2786731 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 2786731 30864246 ~ 30876080 (-) True LOC120568929

Expression Profile