RNA id: XM_039814618.1


Basic Information

Item Value
RNA id XM_039814618.1
length 5074
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC120567659
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28086817 ~ 28104458 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacaggcacaaacacacacacatcagcaggtGCTGCATCACTGCTCTACtctgcctcacacacacacacagtgtagacAGTGCAAGATCTGGCTGAATGCACTAACCTGCATCATGCACACAGGTGAATATCCACACAAAGCTTACCTCTGAGCCCAGGAGAACCTCTGTCAGAGTGCTATCGGTTTTCACAGCAGATGGCAACGCTGGCAAAGATGCTGAAAGACAGGTAAAGGGAGGGAGCCGTCAGCACCGGCTGactgcagacagacaaacacttcTACGGAGACTTGCTGTGGTGATGGTGAATCAATATCTTAAGACTACCTGATGACAATGGAGTTTCTAGGGCCTGACTTCATCACCTGCTGTCACCAAACAGATGCAGTGTAACCTTTTAAAACCCACCTGCTCTATTATCCAGCATATTTCTTGCCTTATTGCTACCATTCCACTGTACCAGCACATCCTTAAACATTATCTACCTGCTCGACACTTGCCCAGGTGCTTCCATTAGCTTTTAAAAGCTCCTCCAGTTTTTTTCTCCCTTCAGAGAACCTCCATTCCCAGATGATGCGGACGGACGTTAAAGGCCGAAGCGCCTCCCCTCACAGGATAACCTATAAGTCTGACTTCCACGCCATCAAATGTTCATTTGACACTGCGACCAGTCTACAACCAGCGACcaaacctgctgctgctgcagtgcaCCCAACCAGGCTGCCATCCAGCCTGTCCGATCCAATGATGTCCCACAGCAGCACCAGTGGCAGCAGAGGGAGAGTCCACAGCACCAGGGGGACCAAGATCCGAGACAACATCTTCCTGAAAATGGACAACCGGCAGCCGAAACCAGATGGAGGTCCGGTGCAGAGTTCTGGCTCCCCACCCCTCCTTCCTCCCCGTAATCCCACCCTACAGCTCCAAACGTCACCTTTCTCTGCATCCAGACGTTCGGTCGTCATTTCCTCGTCTGTTCTGAGCACCGCGGCCAACATTTCTCTTCCAGAATCTTCCCTGCCGCAGGATAAATCAACCAGATCAGAGGAGATGGCGGACATTGACAGAGCTGCTCTGGCTCAGAAGTTCTCTGTCACCCGGAGGTTGTTTGAGACCAAGGTGATGGAGGTTGGAGGTGGTGGAGGGCAGGTTTCGAAAGGGAGGGGAAGCAAAGCGGATGGGGAAGAGGGGATAGTGGGAGCCAGCCAGGTGGAAAAAGAGGGGGCTGGCTTTGATAAAGACCAATCCGTAAACCCACCCATCGTAAATGTGTCCTTGCCAAAGCCTCCTCCACAGGACTCGCTGACAAGGCACCCTACATCACCCGTATCCGATGGCCCAGGTGAATCATCCAACAAATCTCCCTCCTGTCTTGACAAACATGGTCAAACCACAGCATCACAAACGGAGGAAGAAAGGACAGCAAGTGCTACTCTTAACTTCTACTTGACTCCTGAGGAGCCAGTGAGGGCGGAACTAGTGGACGTAAAGAACGGGTCATCAGAAAGTGATGAGAATGAGGAAGAAAAGGAGCGGAAAGAGGACAAAAACTGGCGTAAGGATGAGGGGGGGAAGTACACGAACAAGGTTGTAGGAGAACGTGTGCAGGAGCTAGTGGATGATGTTTTTGAAGAGCCCCGCATGGAAACACCTAGACCTTGTAGGCCAGTTGTTCCTTCAGAAGAACACCAGAAGGAGTCAGCATCAGCCAGCGTGCCATCTAAAAGAGAGACTACGGAAGGCCGGGAAGGTGAAAGAGACAAGTATCAGCAGGTGAGTGAAGAATGGGAGGGTGAAAGGGAGGGGCAGAACACCCAGTTCATTGCACGGGCTGAGGAGTCAACAGAAAAGAGGGACAACGGGGAGAAAAAGCCTGTGGAAGAAAGTGCTGGAAGGACAGAGAGCGACGTGATGCAAGAGGAGGATGATGACAAGGAAGTTGAGCGATACAGTGTGGGAAAAAGGAAAggtggagaagaagaagaacgcaAACAAAGTCGAGAGGAGGAAAGAACTGAGGGAAAAGGAGGTTCAACATCGGAGCCGCGAGAGGAGATCCAGCACGAGCAGCGCAGAGAAGGCAGGGATGGAAGAGATGATATCAGAGAAGGCGAAGAGGACCAGACAGGATGTGCAGTTATATGCGGGATTGAGAACGAGGCTTTTGTGCATGAGCAGGAATCCCACTCTCACCCAGAGCATCCAAGTCAGGAATGGGAAAACTCTTTACATGGAAATCTGCTTTCAATGCAATATGCGGAAATTCCTGGTGTGCCTgaactggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggagaaggagaaggaggatgcAGCAGAAGTTGCAAAGAGAAAAGTCCGGTTCACGTCAGCACCAATCAAGGTGTACAGCACTTATTCTAATGCAGAGTACGACAGACACAATGAGGACATTGACCCGGTGTCCGCCTCGGCTGAGTTTGAGCTGGAGAAGAGAGTGGACAGGATGGATGTCTTTCCGGTGGAGATAGAGAAGGGAGAAGAGGGCCTGGGCATCAGTATAATAGGAATGGGTGTAGGAGCCGACCAGGGGCTGGAAAAACTGGGAATCTTTGTCAAGACAGTCACCGAAGGAGGAGCAACACAGAAGGATCGAAGgatTCAGGTGAATGACCAGATAGTGGAGGTTGATGGGGTGAGTTTGGTCGGAGTGTCCCAGCTGTTTGAGGCAAAAAGGCTaaaaaaaagcccccccccctccaaaaaaatGTTTTTGATTGGCCGAGAGAAGGCGGGCGTGGAGAGCGAGGTGGCGCGACTGATCAACGAAAGCCTGGAAATGGATAAAACATCCAAGATGGGAAGAGCAAGCGAGGATGAGGAAAATGACTGTAGCATGTCAGAGAGGTCAGtggcagaggaagaggaggaagatgaagtGGAGGACGTCGCTGTTCTTTCCGGTCTGGACAACTACCAGCTTTGCCTCAAATACCAGCAGCTTCAGTCGAAACTACGAAACCGAGCAGCCCAGCTTCACCACGCCAGAGAAAAGTTAAAGGCATGGGAGGAGCAGCAGGCCTGTTGGGAGAGCCAGAGGACTGAGCTGGAGCAAAGAGTGGAAGATGGAGAGGACAAAGCTGACAAACTAGAGAAgtaTTGGCAAGAGGCCCAGACACTATGCAGGGTTGTGAGCCAGCGACTGGCTGATGCCCAGAGCCAATCGGAAAGCTTGGAGATCAAATACAGCAAAGCCAAGAGACTGGTCAGAGAATACCAGAGCAGagaggaggaaagggagAACAGAGAAGCAGATTTGAGAGGACaaatggtggagagagagaagctgcACAGAGAGACAGTTGAAAGACTACAAATCCAGATAGCGCAGCTTGAGGGGAAAAATCCtgcagctgagagagagaacCACTCTGGGGACACTTCAGGCACAGACTGGCATCTTCCAGTTCCTGACGCAGGACGTCTAGACTCCAGCGCTCACAAAGCCAAAGCTCAGCTGGCCCAGAAATCCAAGCGCCACCCGCCCTCTCGAGACAAACTCCGAGAGAGCTTCAGAAAGCAGgAAGAGGAAGTTGAGAAACCACAGCAGAGCGAGTCCCTGTCTGCTGCCACGGTGATCCAAAGGAGCAGCAGAAGTGACCTGTCCAGCGCCTCGTCTTTCTCCGCCCTCAGTCCTCACCCTGCCAGCAGCTCCGTCTTCACGCCTCCCATCTACATCACTGGCACCGTCACTCCCTCGTCACGCAACTCCTCCACATCCAGAAAGTCCAAAAGGAGATTTCCCAACTTCAGTGGCCTTCGCAAGTCTCTCAGCAAAAGGAGAAGTGAGAAACACAGCAAAAGCTCCATGAACAGCAGGGGGTCGTGTGGGGACCTGGTGGATGAGCCCGCCGGGGTTTCTCCGTCCGATTCAGTCGCCTCCATGCCGTCTTGCCTGCACTTCCCGTGGTTCGCGGAGCGCGGGCGAGAAAAAGCCGCGGACGCCgagagaggcagggagagacTTCGCTCTGTGTCCAGCAGCAGCTTACCGTACCTGACCACCACCGGTAGACGAGATCAGAGTATCGGCTCTCCAGTGGGCAGCTCCAGCATGGTGGGTCATGTCTCGGTTCTCTCCGGACACTCTCACACTTTCACCTTTTCCTCCACTGAGACGTTGGACGATGACCCAGTTCCCAGCAATAACAACCACCAGTGGCCGAGTCGACCCGTCTCGGAGtggaacagccagcaggtgTGCCTGTGGCTAGTCGCCATGAACATGGACGAGTACGCGTCAGAGTTCGCCGCCAGAGGCGTGGACGGGCCACAGCTGCTCAACATGGACAGTGAGAAACTCAAGGCTCTGGGGGTGTGCAGTCAAAGCGACCGGTCCGCCCTCAAGAGGAAGCTGAAGGAGAtgaagaaaaaagaggaaaaagaacagaggagaggagagaagaggccCAAAGAGGAAATGGAGAAAGATAAGAACAATGTTTTGGAAAAGGAGAGTGAAGACCAAGAGAAGGCgagggtgatgatgatgatgatgaagtctGTACAAGATGCCAGACTCAGTGGCAAAACCATAAGAACAGAGTCCCTCTTATAAAAGGAAAGAGGTGATATCTGAGATACACCACCAGCATGAGGGCGTGTTTGCAGCTTTAACACGCACAAAAATACACTTGAAACCATTTCTATTTAGTTAATAGAAACGTCTAGATCTACTGCACCCATCCTCACACATCTCAAAGGCTATCATTTAGTATACAGCAGAACACTGGTTGGTTTTAACTGATGGATCTTTAGAGCAGAGGTTACTCATGCACAAGTTCACACTTGCAGCAAATGTTTATTTCCGTATGTTATGTAcatgttaagtgtgtgtgtgtgacaagctACTGTTTCACGgtaactgtttatttttttttttaatcatgaatCTTAAATTATCCTTTTAGAATGATCTTTAATATTTAACGATGTGCTGACTTAAGCACTCAGGTATTTGCTGTAAAtgctttttttatgtattaataaataatgCTTTAAACTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159760 lncRNA upstream 44627 27944251 ~ 28042190 (+) True G118537
TU159779 lncRNA upstream 49487 28036461 ~ 28037330 (+) True G118549
TU159731 lncRNA upstream 381746 27704170 ~ 27705071 (+) False LOC120568664
TU159727 lncRNA upstream 396130 27689012 ~ 27690687 (+) True G118514
TU159690 lncRNA upstream 476492 27610098 ~ 27610325 (+) True G118488
TU159804 lncRNA downstream 14809 28119267 ~ 28119624 (+) True G118564
TU159792 lncRNA downstream 52515 28156973 ~ 28159589 (+) False LOC120568082
TU159816 lncRNA downstream 72029 28176487 ~ 28178341 (+) True G118575
TU159790 lncRNA downstream 105257 28209715 ~ 28214108 (+) True G118554
TU159927 lncRNA downstream 156414 28260872 ~ 28261084 (+) True G118641
XM_039814528.1 mRNA upstream 61571 27960902 ~ 28025246 (+) True dnah9l
XM_039815853.1 mRNA upstream 248699 27738992 ~ 27838118 (+) True epha4b
XM_039815854.1 mRNA upstream 248699 27738992 ~ 27838118 (+) False epha4b
XM_039816318.1 mRNA upstream 381606 27704001 ~ 27705211 (+) True LOC120568664
XM_039814839.1 mRNA upstream 398761 27686164 ~ 27688056 (+) True LOC120567796
XM_039815281.1 mRNA downstream 52343 28156801 ~ 28169970 (+) True LOC120568082
XM_039815282.1 mRNA downstream 88457 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA downstream 89080 28193538 ~ 28203729 (+) False pcyt1aa
XM_039815057.1 mRNA downstream 169209 28273667 ~ 28473545 (+) True clstn2a
XM_039815387.1 mRNA downstream 776187 28880645 ~ 28893212 (+) False LOC120568119
TU159680 other upstream 477099 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1200787 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 1316906 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1486745 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 1668809 26416508 ~ 26418008 (+) True ccl20a.3
TU159791 other downstream 52515 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 1863955 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2464937 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3066759 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 3094502 31198960 ~ 31200014 (+) False G119123

Expression Profile