RNA id: XM_039814643.1


Basic Information

Item Value
RNA id XM_039814643.1
length 1638
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC120567673
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26534496 ~ 26553081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACTCAGGGAAAGGATGACAAGGATGGAGAGCTGCAGCAGGAACACATTGACCCGGTGACAACCGTCACTGTGGACTACAGCTGCTCCAGTGGCATGGCTACAGTAACTTGGGATTTGGTATTCGGGGCCAACATGTACAGGGCCGTGGCCGTCGATGGCACCGGCACAGCCCTTAACTGCACATCCTCCTCCACCAGCTGCCAGATCCCCATCACCACATGTGGTGAGAAGTACCAGGTCCATGTGACAGCCATCTCTGACGACTGTGAGAGCACCTCCAACGTCACCTCTTCGTTCGAGACAGTGCCCTGTGCACCAGCTAATCCTAAAACCAGTCAGGACTGCTCCAGCAATGTGATTGTCTTCAGCTGGGATCCCACCAACAACACCTTCTACTATGAGGCAATGGCTGTGGACAACACTGGCAAAACGACTGAGTGCAGGACGGCAGACAACACATGTTCCTTCACTAATACGGACTGTGGTCAGTTCTACAAGTTCACTGTGTACGCCGTAAGCCAATGTAACAGCGAAGTCAGCCAACCTGAGTTTGTCCGCACCTCTCCTTGTCTACCAACAAATGTGTTGACAGGAGCTGGGTGTCACTCTGACATGTTGATCACAACCTGGGACTCTGCTGCCGGAGCTCTTTCCTACACGGTAGAAGCAAAGGATAACACAGGAGAAACCTACAACTGCACCACCTCGTCCAACAGCTGTGCGATGAACGGGGTTCTGTGTGGTGAACAACTCAGCGTGTGGATCACCGCCTCCAATGACAACTGCTCCACTGACAAGGTGCTGGGAGATATTGCTCAGACTGTTCCCTGCAACCCCTTCAATGTCTCAGCATCAGTCGACTGCAGCCAAGACTCTGCTAGAGTCAACTGGATGACGAGCATCGGTGCTATATTCTACATTGCCATTGCTGAGGATGGAAATGGGAATTCGCACAGTTGCAATTCAATGGACACCAACTGCTTGATCaaaggcctgaaatgtggaCAGAATTACACTGCCAGCGTTATCGGCACCAATCTGGTGTGCAACAGCAGCTCCAGCAACGAGGTCACCTTCATGACAGCTCCTTGTCCTCCAACCAACATTGAGGCATTCAGAGACTGTGCCGCCAACCATGCTTTGATAGTCTGGCAGAACCATCAGCCTACAGGCCTCTACACAGCAACCATAGAGGATCAGAGCCGAGCGCAGCTCACCTGCACCAGCAACACGGTCAACAACTGTAAGATCCCCTCTCTGGCCTGTGGGAAGACATACAACGTCACTGTTACCTACAATGATGGAAACTGTCCGTCCACCTCCACACCTATCAACATGGACTCAGTGCCATGCGTTCCTGAGGATGTGAGGGCCAGTGTGGCGTGTGCTACCGGCGAGCTGGCGGTCACGTGGAACATCTCAGTTCCTGCAGAGAACTACACCACCATGATCTCCACAGGAGTGGGTCAGCCTCTGTACTGTAACTCTACAGAGACACAGTGCACCGTGAAAGGCTTGTTGTGTGGAAGCTCCTACGCCGTGATCGTCTTCTCCGTCACCGGGACGTGCATTAGTCTGCCGAGTACCGAGGTCACCGTGCAAACATGTGAGAAACGCAGACTGATCATCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159119 lncRNA upstream 37694 26421454 ~ 26496802 (+) False wdr47a
TU159118 lncRNA upstream 38655 26455031 ~ 26495841 (+) False wdr47a
TU159066 lncRNA upstream 219866 26314265 ~ 26314630 (+) True G118009
TU158990 lncRNA upstream 226862 26306689 ~ 26307634 (+) False ece2a
TU158986 lncRNA upstream 325625 26208356 ~ 26208871 (+) True G117938
TU159201 lncRNA downstream 49575 26602656 ~ 26674451 (+) True G118115
TU159223 lncRNA downstream 109201 26662282 ~ 26664844 (+) True G118135
XR_005640824.1 lncRNA downstream 190660 26743741 ~ 26754418 (+) False LOC120569009
TU159236 lncRNA downstream 190681 26743762 ~ 26763260 (+) True LOC120569009
XR_005640821.1 lncRNA downstream 228286 26781367 ~ 26784724 (+) False LOC120569008
XM_039816847.1 mRNA upstream 13393 26508928 ~ 26521103 (+) True LOC120569037
XM_039816848.1 mRNA upstream 13393 26508928 ~ 26521103 (+) False LOC120569037
XM_039816849.1 mRNA upstream 15199 26508928 ~ 26519297 (+) False LOC120569037
XM_039816850.1 mRNA upstream 37687 26480776 ~ 26496809 (+) True wdr47a
XM_039816851.1 mRNA upstream 37687 26480776 ~ 26496809 (+) False wdr47a
XM_039814644.1 mRNA downstream 989 26554070 ~ 26559641 (+) True LOC120567674
XM_039816421.1 mRNA downstream 6527 26559608 ~ 26565645 (+) True LOC120568740
XM_039816370.1 mRNA downstream 27522 26580603 ~ 26588571 (+) True LOC120568699
XM_039816625.1 mRNA downstream 37701 26590782 ~ 26599934 (+) False prkab2
XM_039816624.1 mRNA downstream 37715 26590796 ~ 26599934 (+) False prkab2
TU159113 other upstream 116488 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 132418 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 132418 26399420 ~ 26402078 (+) False G118011
TU158989 other upstream 317455 26215727 ~ 26217041 (+) True LOC120568800
TU158825 other upstream 703801 25830055 ~ 25830695 (+) True G117829
TU159178 other downstream 37749 26590830 ~ 26600072 (+) True prkab2
TU159241 other downstream 212411 26765492 ~ 26769911 (+) True G118149
TU159378 other downstream 330478 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 1048943 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1603892 28156973 ~ 28159589 (+) False LOC120568082

Expression Profile