RNA id: XM_039814654.1



Basic Information


Item Value
RNA id XM_039814654.1
length 492
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120567685
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29685050 ~ 29690335 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATGACGCAAGCGAACGTCTTCCTCTTGCTTTTCTCCACCAAACGAAATGTTGAGGCTGGTTTCAAAAACCTGACTGAGGAGAGAGATGACCTGAACAGGAAGCTGAATAACTTAGCTCAAAAAGGATGGGAGTATTTCAGCGGTAGTTTGTACTACATTTCTTCTATCAAGAAAAACTGGCAAGAGAGTAGAGATGACTGTCGTCAAAAGGGTGCAGACCTGGTGATTATCAACAGCAAAGAAGAACAggatttcacaataaaatttACGAAGATCATGTGGATTGGCCTGACTGACTCAGAGACAGAGGGGATGTGGAAATGGGTGGATGGGACTCCACTGACCAAAAGCTACTGGGTTTCCGGGGAGCCTAACGGTGACAAAAAGGAGAACTGTGTGAAAATAAAGAAGTTTGATTCAGAAAACAGCTGGAATGATCTAAGCTGTTCCACTCTACTCAACTGGATCTGTGAAATGAAAGACCGTCCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160239 lncRNA downstream 57330 29627392 ~ 29627720 (-) True G118906
TU160238 lncRNA downstream 58189 29626659 ~ 29626861 (-) True G118905
XR_005640788.1 lncRNA downstream 174253 29508648 ~ 29510797 (-) False LOC120568801
TU160274 lncRNA upstream 61506 29751841 ~ 29752060 (-) True G118933
XR_005640609.1 lncRNA upstream 91772 29782107 ~ 29796905 (-) True LOC120567751
TU160282 lncRNA upstream 147876 29838211 ~ 29838620 (-) True G118940
TU160292 lncRNA upstream 276192 29966527 ~ 29966743 (-) True G118950
TU160294 lncRNA upstream 277679 29968014 ~ 29968220 (-) True G118952
XM_039814721.1 mRNA downstream 35358 29636103 ~ 29649692 (-) False LOC120567741
XM_039814720.1 mRNA downstream 35358 29636103 ~ 29649692 (-) False LOC120567741
XM_039814718.1 mRNA downstream 35358 29636103 ~ 29649692 (-) False LOC120567741
XM_039814716.1 mRNA downstream 35358 29636103 ~ 29649692 (-) True LOC120567741
XM_039814717.1 mRNA downstream 35359 29636103 ~ 29649691 (-) False LOC120567741
XM_039814658.1 mRNA upstream 279755 29970090 ~ 29974289 (-) True LOC120567690
XM_039816749.1 mRNA upstream 629617 30319952 ~ 30438652 (-) False LOC120568974
XM_039816748.1 mRNA upstream 629617 30319952 ~ 30438652 (-) True LOC120568974
XM_039816750.1 mRNA upstream 664539 30354874 ~ 30438652 (-) False LOC120568974
XM_039815957.1 mRNA upstream 752050 30442385 ~ 30477185 (-) False LOC120568429
TU160248 other downstream 35258 29644363 ~ 29649792 (-) False LOC120567741
TU160179 other downstream 264398 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 698731 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 1966291 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 1970660 27713467 ~ 27714390 (-) False G118524
TU160542 other upstream 1173911 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 1173911 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 1436095 31126430 ~ 31174951 (-) True G119177
TU160575 other upstream 1479587 31169922 ~ 31171610 (-) True G119169
TU160576 other upstream 1480047 31170382 ~ 31171610 (-) False G119169

Expression Profile