RNA id: XM_039814660.1


Basic Information

Item Value
RNA id XM_039814660.1
length 1571
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC120567691
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31007722 ~ 31011324 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGTggagttttttgtttgtctgtcttgtcttttgtttgtccctgtgtgtgttttatattgtgTATCATGTCTGATCCTGAGTTGGACTGTCTCCTGAAGGAGATGAGTGACGTTGTCGATGAGGCTGAACATCAGGCTCACCTCCAAAACCTCCAACAGCTCATTAGCCAGTCAGCAGAACCATCCACCAGTCATCCATCAAACAGCAAGCAAGACGTTAGGTGGAATAAGAGGGACAgtgatggaaacattatttaCGGCAGGCCCAGATCATCCCGCAAACAAGcagGTCCCAGTCACAGCCAGAGTCGGAAGACTGGTGTCTCTAATGTCAGGGCTCCGGACACCAGTGGGGAAGTGACCAGTGACTTTCCTTCTGTTACTGCGGAGTCCTTCCTTCAAGAGCTTAAACGCTCACTGGGTGAGGACATACATGAGGATGAAACGCCACCTCAAGCCTCAACAGACTGGTCGACCCGAAAGAGCCTCATATCAGGGTggtgggagaaagagagacccCGTCTGGTCAACACCATGGTGGCTGGACAACATGCGGCAACTCGGATCTGCCAACACTGTGGAAACGGTCCAGCCGTTATCCGTTGTTGTGACTGCCGACCACACCCATTCCTCTGTGGCCAGTGTGATGTCAGGGTCCACCGAGGTCAAGTGTTCCACAACAGGGATTCAATGACACATGGATTTTTTCATCCATTGCCTCCCACAACTTGTGTTGTGGAGAGGTCGATGAAGCCGTCAAaGCGTCTTGTACCTTTGGAGATGCCAGAGACAATATGTGGTTGTCTACGAGGATCGTCCACTGTCAACGCAGGACAGTCCATAGTTGTGGTTACAATGAATGGGCGATATGATCTCAGATTGCCTCAGACCAGATGCAAGGCATGTGAAGCCACTTGGAGTCCTGGAGTGGATGACCTGATCCGCAATGACTACTGGCCTGCCACTTCTCACCATTCAACAGTGTACGCAACAGAtgtccttttttcttttgaagaGCTGAAGATGGCAGCACCAGGGCTGTCTAGCCAAGCATTTCTTAGAATGCTGGATCAACGTACTGTTCGCTTTGGCCGTAGCGGAAACATCACAGCAGACAGCTTCCGTAAAAGCTTCTTCGAGTGGGAGGCTGTCCGATTTGAAGTGGACAAATTATGCCTGGTGGACCACTTTGACTGCCCAGCATGCAGCCCAGACATGCTTGCAGTATCTGTTGATGGAAACCGCAAGCACTACAGATTCAAGAGTGCAGCAAGATCGGAGGAACAAGCCATCTTTGATGGCGTGTTCATCGCGAATGATGACGACGTTGGAAGATTTGTTGACTACGTCCATACCTCAACCAGTCATGTCTCTGGAAGAGGTGTCTGTGGAGGGCAGTGGTCAGCTGCGCGTGAAACATCTCAGAAGTCGTCAGGAAAAACAGATGAGGAGGGCCTGGAACTTGCGTGTGCCGTCATGGGGTTCTCCGTTACGTTCCCCTCAATATGTTCAGGGGAGATTTTTGCCTACCCCTGTACCTCCAAAAGCAAATGGCCTGTAAGCCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640809.1 lncRNA upstream 81439 30924766 ~ 30926283 (+) True LOC120568932
TU160455 lncRNA upstream 111783 30850964 ~ 30895939 (+) True G119076
TU160449 lncRNA upstream 212219 30795242 ~ 30795503 (+) True G119071
TU160444 lncRNA upstream 314438 30692988 ~ 30693284 (+) True G119066
TU160442 lncRNA upstream 325401 30682081 ~ 30682321 (+) True G119064
XR_005640808.1 lncRNA downstream 72944 31084268 ~ 31085538 (+) True LOC120568931
TU160500 lncRNA downstream 153902 31165226 ~ 31203586 (+) False G119114
TU160514 lncRNA downstream 182807 31194131 ~ 31197339 (+) True G119122
TU160518 lncRNA downstream 187636 31198960 ~ 31231924 (+) False G119123
TU160517 lncRNA downstream 196306 31207630 ~ 31235565 (+) True G119123
XM_039816208.1 mRNA upstream 330370 30569095 ~ 30677352 (+) True LOC120568595
XM_039816206.1 mRNA upstream 364084 30569095 ~ 30643638 (+) False LOC120568595
XM_039816207.1 mRNA upstream 364084 30569345 ~ 30643638 (+) False LOC120568595
XM_039816413.1 mRNA upstream 789000 30101634 ~ 30218722 (+) True LOC120568730
XM_039817025.1 mRNA upstream 950613 30055815 ~ 30057109 (+) True LOC120569133
XM_039816757.1 mRNA downstream 420482 31431806 ~ 31453460 (+) True LOC120568980
XM_039816635.1 mRNA downstream 849406 31860730 ~ 31865235 (+) True eif3f
XM_039814661.1 mRNA downstream 855663 31866987 ~ 31869495 (+) False dnaaf6
XM_039814662.1 mRNA downstream 877584 31888908 ~ 31914575 (+) False pip4p1a
XM_039816640.1 mRNA downstream 917821 31929145 ~ 31939478 (+) True LOC120568893
TU160411 other upstream 432841 30569395 ~ 30574881 (+) False LOC120568595
TU160295 other upstream 1037872 29968413 ~ 29969850 (+) False LOC120567689
TU159791 other upstream 2848133 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 3398004 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 4121692 26883559 ~ 26886030 (+) True G118234
TU160502 other downstream 159893 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 187636 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 448540 31459864 ~ 31460908 (+) True G119257
TU160764 other downstream 854431 31865755 ~ 31868793 (+) True dnaaf6
TU160769 other downstream 877604 31888928 ~ 31912607 (+) False pip4p1a

Expression Profile