RNA id: XM_039814685.1


Basic Information

Item Value
RNA id XM_039814685.1
length 509
RNA type mRNA
GC content 0.59
exon number 2
gene id LOC120567716
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37597814 ~ 37598425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCTGAACTGTTTGTGGATctccggcggcagcgggaggtgGAGAGTTCCGTGGCCGGCGACAGCGTCTCTTTCCCCGGGCAGGAACACCGCTTCgtctcgctgctgcgccggtccccgctgatccagatcggaccggccaaagacagagtggtgatcggcaggatcttccacgtagtccaggacgacctgtatgtagATTTCGGTTGGAAGTTCCACTGCGTTTGCTGGCGGGacggagaagaaaaagaaacgggcagcagagtccgtttgcggctgcaggatctggagctcactgcccgcttcctggaagccaaaaccgacaccacgctgctGGAGGCCCGGGCCATACTGCTGGGACAGGCTAAGAAAGGAAGAGCCCGGGAGAACTAGAACCAGGACtcagcggagcggactgtcacagcctgctgaagtttaaatcagaggtttcctaaagggagtctggcgggactcggactgtggacgacgaaacatgattttaagtctcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162741 lncRNA upstream 184618 37339102 ~ 37413196 (+) False G120922
TU162740 lncRNA upstream 254975 37339102 ~ 37342839 (+) True G120922
TU162729 lncRNA upstream 291800 37304894 ~ 37306014 (+) False G120914
TU162725 lncRNA upstream 300769 37294908 ~ 37297045 (+) True G120910
TU162681 lncRNA upstream 349946 37246238 ~ 37247868 (+) True G120875
XR_005640603.1 lncRNA downstream 286960 37885385 ~ 37891716 (+) True LOC120567664
TU162818 lncRNA downstream 405261 38003686 ~ 38003940 (+) True G120987
TU162826 lncRNA downstream 426570 38024995 ~ 38025205 (+) True G120993
TU162827 lncRNA downstream 429170 38027595 ~ 38042530 (+) True G120994
TU162828 lncRNA downstream 501719 38100144 ~ 38100905 (+) True G120995
XM_039815045.1 mRNA upstream 367103 37209305 ~ 37230711 (+) True LOC120567940
XM_039815567.1 mRNA upstream 510371 36879918 ~ 37087443 (+) True LOC120568208
XM_039815569.1 mRNA upstream 741971 36855196 ~ 36855843 (+) True LOC120568211
XM_039815568.1 mRNA upstream 753164 36844011 ~ 36844650 (+) True LOC120568209
XM_039816078.1 mRNA upstream 850146 36737148 ~ 36747668 (+) True LOC120568506
XM_039815841.1 mRNA downstream 391140 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA downstream 413341 38011766 ~ 38019068 (+) False LOC120568367
XM_039816922.1 mRNA downstream 440656 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA downstream 440656 38039081 ~ 38098246 (+) False LOC120569077
XM_039814686.1 mRNA downstream 504152 38102577 ~ 38103710 (+) True LOC120567717
TU162730 other upstream 291800 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 579024 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 1191125 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 1192041 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 1348287 36249445 ~ 36249527 (+) True trnal-caa_4
TU162816 other downstream 413452 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 598616 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 1157259 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 1793547 39391972 ~ 39392776 (+) True G121171

Expression Profile