RNA id: XM_039814686.1


Basic Information

Item Value
RNA id XM_039814686.1
length 1134
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC120567717
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 38102577 ~ 38103710 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTGATGCTGGTTCTCCGTCTGCCCGTCCTCCTGCTGGCCGGCTTCACCCTGTTCAGTGACGAGCAGGACAGATTTATCTGCAACACCATCCAGCCAGGCTGCTCCAATGTGTGTTTCGATGTATTTGCTCCTGTATCCGTCTTCCATCTCTGGCTTTTCCACCTCATTCTTCTCTGTCTTCCCCATGTGCTGTTTGCAACCTATGTTGTGCATAAAGTTTTGTTGTATCCCTATTTTGGAGGGTTCTACTGCGACAGGAGTCGAGGAGGTTCACCTTTCAGCCGTGAGAACTCCAGCTCTTCAAGAGAAGTGTCTTTGCATAAAGCTCCACTTCACGAACTGCAACGAGAATGGGGAGCGCCGCGCTTCTACTGCGCTTACTTCCTGGTTGTAATTCTACAGATCCTTGTGGAAGTGGTTTTCGGTGCAGGCCAGTTTTTTCTCTTTGGCTCGTCCATTCCTAGGAGCTTCCTGTGTTACGAGGCGCCCTGCACATCTGGCGTGGAGTGCTACATTTCCAGACCGACTGAGAAGACCTTAATGCTCAACTTGATGCTGGCCGTCGCCTCCTTGTCCATTCTGCTGAGTTTGGTTGACCTGGTGAGCTCCATGAAGGCGATGGTGAGGTGGAGGACACAAAGGGAGATGCTGATGGAGGAGATGAGTAAAGGAGAGCAAAGCAGTATGTTCACAACGACAACCATGACTGAAGACAACGATGTGCCTTTAACCAGAAGAATCAGCCCGAGTGAAAGCTCAAAGAATGGTCTCATAGATCAAAAACCAGTTGTTGTTCCAGTGTCAGATGGTGAACCTCTTCATGCTACGGTGAATGGTGGACCCGTCACTAAAAATGGCGAAGTCACTAATGACACGAGGCCAGAAAGCAAAGATGCTAAAGTGGAGATGTCTCGCGCACCCACTCCCATGAGCACTCCAGTACCAACTCACTTTGTCCTCCACAGCCACCTGAGACCCCCCCTGTCCACTCGCCTTGACAGAGGACCACCAAACCCCAGGATGCCAACACCTATGGGTCTCAAAACGCTGGACCAGAACACTCCAGTTGGGGAAAACTCAGGCCAACACTCTGATAGCAGTGAGTCTCAAGAGAAGAGGGCATGGGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162828 lncRNA upstream 1672 38100144 ~ 38100905 (+) True G120995
TU162830 lncRNA upstream 1672 38100184 ~ 38100905 (+) False G120995
TU162827 lncRNA upstream 60047 38027595 ~ 38042530 (+) True G120994
TU162826 lncRNA upstream 77372 38024995 ~ 38025205 (+) True G120993
TU162818 lncRNA upstream 98637 38003686 ~ 38003940 (+) True G120987
TU162863 lncRNA downstream 52643 38156353 ~ 38156690 (+) True G121023
TU162864 lncRNA downstream 84265 38187975 ~ 38188247 (+) True G121024
TU162873 lncRNA downstream 325951 38429661 ~ 38430105 (+) True G121032
TU162875 lncRNA downstream 331037 38434747 ~ 38435000 (+) True G121034
TU162882 lncRNA downstream 444716 38548426 ~ 38548626 (+) True G121041
XM_039816922.1 mRNA upstream 4331 38039081 ~ 38098246 (+) True LOC120569077
XM_039816923.1 mRNA upstream 4331 38039081 ~ 38098246 (+) False LOC120569077
XM_039815841.1 mRNA upstream 83509 37989565 ~ 38019068 (+) True LOC120568367
XM_039815840.1 mRNA upstream 83509 38011766 ~ 38019068 (+) False LOC120568367
XM_039814685.1 mRNA upstream 504152 37597814 ~ 37598425 (+) True LOC120567716
XM_039816328.1 mRNA downstream 516626 38620336 ~ 38628410 (+) True LOC120568674
XM_039814943.1 mRNA downstream 715337 38819047 ~ 38843071 (+) True pitrm1
XM_039816250.1 mRNA downstream 1382420 39486130 ~ 39522532 (+) False frrs1a
XM_039816251.1 mRNA downstream 1382420 39486130 ~ 39522470 (+) False frrs1a
XM_039816254.1 mRNA downstream 1382420 39486130 ~ 39522239 (+) False frrs1a
TU162816 other upstream 83539 38011877 ~ 38019038 (+) False LOC120568367
TU162730 other upstream 796563 37302894 ~ 37306014 (+) True G120914
TU162632 other upstream 1083787 37010999 ~ 37018790 (+) False LOC120568208
TU162480 other upstream 1695888 36406121 ~ 36406689 (+) True G120717
TU162479 other upstream 1696804 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_597 other downstream 93331 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 651974 38755684 ~ 38755931 (+) True G121058
TU163034 other downstream 1288262 39391972 ~ 39392776 (+) True G121171

Expression Profile