RNA id: XM_039814689.1


Basic Information

Item Value
RNA id XM_039814689.1
length 3821
RNA type mRNA
GC content 0.49
exon number 19
gene id pask
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26115932 ~ 26130177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAAAACCAGTCAGGTCCTGGAGGAAGCATTGGAAGAAGATTTTCCACTTCTGGATGGAActgttgtggctgtgtctgGAAAAGTGTGAAGCATTTAGGATGCAGATTGCTTGAGGATAGGTGCTATTATGGAAGAGAGATGTAGCCTAAGAAGACTGAATAGAGGATTtgcagtgaGTGGATGTTGTGACATTATCTGGAGATGTGCCAATGTCAGTGTGTACCTACAGACGGTCACAAAATGGAGAGCACTTGCTTGTCATGATGGAAAGTGTGGAAAGGGTATCAGCCTTTCTGTCCTTTTCACAAGACGGCAATATCTTAACCTGTGACTTGGCGTTTGCCCATCTCCATGGATACCACCATCCCAACGAGTTAAAAGGGGTGTCTGTGAAGGAGCTGATCCCCTCCTTACAAATCCCCCTGCACAGTAATACGTTGCCCAAAATGCTGAGGGTTCAGAGAGTGTGTGGTAGAAGCAGAGGGGGTGCATCAGTCCCACTGTGTGTCAAACTTCAGGGGCCAGTGCTATGTGGGAGGCCCCAACACCAAAACAATGGGACTGGTTGCACCTGTCCAACAAAGAGTCATGACAGACCAGATGCACAGGGCAATCAGCCATgctctcctcccccctcctctgtGTGCAAGTCAGAAGGCTCAAACTCTGGAGTGCCATCCTCAGAAGTGAAAGTGGACAGCATTGTCCTCTCCCCCTGCCCTGCACTGGAGTACTCGGGGACAGTTTGGGTGTTTGCTCCTCTGAGCGGTCTCCTCCTGCTCCACCCCGATGGCTCAATCTACAGCATCCACAACCACCTGGCTCTCGCGCTGTTTGGCTACGACCAGGACGAGCTGCTGACAAAGACTGTCACTTTTCTGATGCCCGGTTTCTACGGATGGATGACTGACTCAGACAGAAAGGCCAGCCCCTTCTCTGATTCTCAAGCAGAGGGCAATAAAAGTACAGCCTCATCCAAAATATCAGGAAAAAATGACCCTTCCTCACTGGTGGCTGGTGATATGGCCACGGTGCATCAGGCTGTCCTGGGAAGAAGCGCCACAGGTAGAGGCAAGATCTTCACTGGAACCAGCACCAGGCTGGAGAAACAGGGCAGCGCTCTCTCGACCCTTTCTCTTCCTGCTGTCACCTCCACACGAGTGGTTATGGCTGATAACACTACCGAGCTGATGGAGGAGGCAGCCCGGGTTGCTCTCTGCACTAGCCAGCTAGACGGTGCTGATACCACTCAGGCACTCCTCAAGACATTTGCCTGGGTGCAACCTTCGGAAGAAGAGACCTACTGCCTGGTTTCCACTGAACCGCCACACCATAACCGAGAACAGCAGCTCGCCAGTAAAGTTCATGAAAATAATCAGCCTGCCATTAATATTATCCCAGACCTTCCCAGTCAGAATGGACATGCTGTTGGCAGGGCGGGTGGCACCGCGCCTGATGTAGGCAAAGACCACCGCTCGTGTGCCTCTGTGCTCCAAGACTCCAGCTTTGAGGTCATCTCAATGGAGAGCAGGTCATCCTCTGGCTTCTGTGAAACGTTTGCCGTCCATGGTGGTTCTGATCCAGGCCAGGCAATGGACTCCCGGTCAGCACACATAGTGGATTCAGCCAGCTGTTTCCTGGACCTTAACAGCAATGGTGAACTAGTGACCCGTGCCCTGGCCGAGCTAGATCTGAGCGGTAGCGTAGAGCTTCTCAGCGGCAGAGGGTACAACGACGACAACCAAAACTCCATGACATCCTGCGATACAGCTGAGCTCCTGCGTACACCCTCCCCATGCGTGGTAGGGTCGGACCAGGAAGCAGAGCCTGTTGAGATTGGTGTAGATGCCAGAAACGGCTTAAGTGAAGAGCAAGTAGAAAACGACCACAGGGAGCAGGATCACTGGGCTTCTCTCTCGTCAATTCATAAAGAAAAGAGCCAAGAGGTCTGCATGCCAAAGCTGGACATTCCTGCCACGTCTACTCCTAAGAAACAGAAGGTGAATGGACACATCCCGTCCTCAGACACTACACAGATACTGGAGGGGCGATACGAAGGAAGTGCATACCACAGAAATGGCACGAGAGTAGATGTGCAGTGTGACGTGTGCAGGACTAACCTCCCTGATGGAAGCTCCATGTTCTGTGTGTGGATGAGTAGGCCTGGCCAGCAGGGGGCACTGTTGCAAACGGCTCGATCACAGCACAACCAATCGGGAGCCAGTCTGGGAGAGAGGATTTGTGAGGCTTTGCACTCCACCATGGATCTTGAGCAGTCTCGAGCCTGTGACGGGCAGTTTGAAGAAGAGTACCAGCCTCTCAACCCTGTGGGTAAAGGAGCCTTTGGTTTTGTCTGGGAGGCAATGAGACGCTCTGATGGATTAGAAGTGATAGTGAAGTTCATTAAGAAGGCCAGGATAGTGAGTGAGTGCTGGGTAGATGATCCCATGCTGGGACAGGTCAGCCAGGAGATTGCCATACTGACACGAGTACAGCACCACAACATAGTCAAGGTGCTGGAGGTGTTTGAGAATGGGAGTTACttccagatggtgatggagaaACATGGCGATTGCTTGGACCTTTTTGAGTTCATAGACATGCAACCAAGGCTGGATGAACCCCTGGCCAGCTACATCTTTAGACAGCTGGTGGCTGCTGTCTTCTATCTGAGGAATAAGAACATCCTTCACAGGGACATAAAAGACGAGAACATCATCATCGACAAAGGTTTCCACATTCGACTGATAGACTTTGGCTCGGCTGCCATGATGGCTCCCAAGAAGCTCTTCTTCAATTTCTGTGGCACACTGGAGTACTGCTCCCCGGAGGTGCTTCAGGGAAATCCCTATGAGGGTCCAGAGCTGGAGATGTGGTCTCTTGGTGTGTTGCTCTACACTCTGCTATTCAGTGAGAACCCTTTCTGTGGTGTGGGAGAGATCCTGCAGGCCAAACTTAAGCccccattccccctctctccagACCTGCATGGTGTGTTGTGTGGGCTGCTGCACCCTGATCCCGCTCAGAGACTGACTCTGGACCAGCTACTGCTGGACTCCTGGATCAGCCAGCCCATTTCACTGGCAGAGTACAGCTGGACAGAGGTTGTTCCTGCAACTAACACCTACCGCTCACCACAGCACGAGTCCAGTCCTAAAGTGTTTGTCAGGCAAGGCTTGTTCCCGGATGAACATGATGAGACTCTTCCTGATGACGAGGAAGATGAGGATGACAGGTTGTCAATGGTTGCCCTGGAAACGGAGCTTCAGAAGTACCTCCACGAAGATTAAAGACTGAATTTAAAAGGGAATGGACGCCAAGCATCCATCCAACATTTGGTATCATGATGTAGCAATCTTTCcccctttttcttttatctattttatttgttcttttggATTTATGTAAAATTTAAAGCATTAAAATCATCTTATATGATCACAGGGATCCAGCTTTACCACTAAACCACCTAAGTGAGCACAACCTCGAGTTGTTAGCTCAGAAAAACCACACCGAAAACCTTGTTGGATTGAAGTTGAAGGTAATTGTTAAATTGATCATTGTTTAATGTCTTATGTTAATGATTTTAATCTTGAGTGTTTTAATTAAAAGTTGTAAatattttatctatttatttttttatatagcaATAAATATTTGACCATAAATGTGTTGTTCCTTTTTATATGATTAAGGAATTGCCTGTTAATCAGAACTGTAAAAAGTTTGTCAAGCAAACATTGTAAAGTATTGGTATTGTAATATTTATGCAGCAAGTAAAGAAAGTAAATCATTAAATAGTGCAAGAAAGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158959 lncRNA upstream 52887 26058254 ~ 26065839 (+) True G117917
TU158861 lncRNA upstream 67848 26050135 ~ 26050878 (+) False LOC120567655
TU158843 lncRNA upstream 202004 25916500 ~ 25916722 (+) True G117847
TU158842 lncRNA upstream 212410 25906115 ~ 25906316 (+) True G117846
TU158841 lncRNA upstream 213595 25904913 ~ 25905131 (+) True G117845
TU158981 lncRNA downstream 74434 26204611 ~ 26204830 (+) True G117933
TU158986 lncRNA downstream 78179 26208356 ~ 26208871 (+) True G117938
TU158990 lncRNA downstream 176512 26306689 ~ 26307634 (+) False ece2a
TU159066 lncRNA downstream 184088 26314265 ~ 26314630 (+) True G118009
TU159119 lncRNA downstream 291277 26421454 ~ 26496802 (+) False wdr47a
XM_039814696.1 mRNA upstream 3328 26076341 ~ 26115398 (+) False kcnab1b
XM_039814699.1 mRNA downstream 1026 26131203 ~ 26134522 (+) True mterf4
XM_039814701.1 mRNA downstream 4959 26135136 ~ 26139505 (+) True LOC120567725
XM_039814697.1 mRNA downstream 9484 26139661 ~ 26163512 (+) True klhl24a
XM_039814698.1 mRNA downstream 9484 26139661 ~ 26163512 (+) False klhl24a
XM_039815718.1 mRNA downstream 36369 26166546 ~ 26194880 (+) True yeats2
TU158825 other upstream 288031 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 324772 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 362836 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 1164479 24950568 ~ 24954247 (+) True G117664
TU158471 other upstream 1442973 24673924 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 85550 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 265249 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 269243 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 286331 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 460653 26590830 ~ 26600072 (+) True prkab2

Expression Profile