RNA id: XM_039814772.1


Basic Information

Item Value
RNA id XM_039814772.1
length 2639
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC120567763
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27246293 ~ 27251271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAGTGTGTTGTTTACGCCTACTCTCGGTTCAAGATGGCTGCTGGAGACAACAGCGGCAGGCCTCCTTGCCTTAATTTCTCTAGCCCGGGTCCTTTGGGAAACAGCCAGCCCAGCAACAGCGTTTTCTCCATGCCAGCATCCAACGGCGCAGCGGTCGGTACGGCTGGGGGAGCACAGGGAGCAGCGAGGCGTCCCAACCCACAGATGGGGCCTGGCGGGGGAGACAGCAACGGTGTTTCGAGCGGAGCACCGCCGACTGCGCAGAACTCCCTGCAGCAGTCCGCTGCGGCAGGTGCTGCGGCAGCCGGAGTCATGGCCACCCCGGCGTCTAACATGGCAACCACCCCAGCGTCAAATGCGTCGGCGTCGGCAGCACCCACAGCTACTCCGGCAGCTGCGTCTGTGCTGGTCTACCGAGAGCCAGTGTACAACTGGCAGGCAACGAAGAGCACCGTCAAGGAGAGATTTGCTTTCCTCTTCAACAACGAAGTGCTCAGTGACGTTCATTTTTTAGTGGGCAAAGGAATGGGGGTTCAGAGGATACCTGCGCACAGGTTTGTTCTGGCTGTGGGGAGCGCAGTATTTGATGCGATGTTCAACGGTGGGATGGCGACGACCTCAACGGAAATCGAGCTTCCTGATGTGGAGCCAGCTGCCTTTCTGGCCCTGCTAAAGTTTCTCTACTCGGATGAAGTTCAGATCGGGCCTGAGACGGTGATGACCACTCTATATACAGCTAAAAAGTATGCAGTACCAGCACTGGAGGCTCACTGTGTGGAGTTCCTCAAGAAGAACCTGCGAGCAGACAATGCTTTCATGCTGCTCACACAGGCACGGTTGTTTGATGAGCCTCAGCTTGCCAGCCTCTGCCTGGAGAACATCGATAAGAACACTGGAGATGCTCTCGCCGCTGAAGGCTTTACGGACATAGATTTGGATACATTGGTGGCAGTGTTGGAGAGGGATACTCTCGGCGTGAGGGAGGTGCGTTTGTTTGGTGCAGCGGTGCGCTGGGCAGAGGCAGAGGCTCACAGGCAGCAGTTGCAGCCCACACCCGAGAACAAACGCAAAGTGCTGGGCAAAGCTCTCACACTCATCCGCTTTCCTCTCATGACCATTGAGGAGTTTGCTGCAGGTCCAGCCCAGTCCAGTATTCTGACTGACCGAGAGGTGGTGAGTCTCTTCCTCCACTTCACAGTAAACCCAAAGCCTCGCGTGGAGTTCATTGACAGGCCTCGCTGCTGCCTCCGCGGGAAGGAGTGCAGCATCACACGTTTTGGACAGGTGGAGAGCCGCTGGGGTTACAGCGGGACAAGCGACCGCATAAGGTTTTCAGTAAACAGAAGGATATTTGTGGTTGGGTTCGGTCTCTACGGCTCTATACACGGACCCACAGACTACCAAGTTAACATACAGatcatacacacagacagcaacACGGTGCTGGGCCAGAATGATACAGGCTTCAGCTGTGACGGGTCAGCCAACACCTTCAGAGTCATGTTCAAAGAACCAGTGGAGATATTACCCAACGTCAACTACACTGCCTGTGCTACACTGAAGGGCCCGGACTCTCATTATGGGACTAAGGGAATGCGAAAGGTAACACACGAGTCATCGTCTACTGGCACAAAGACGTGTTTCACCTTCTGCTACGCGGCGGGCAACAACAACGGCACTTCTGTAGAGGACGGACAGATTCCCGAGGTCATCTTCTACACATAGTCACCTATGACATAGCAAGGATCTTCCATCAAATGTGACAACCTGACACCAGCGCGGGGCCACGCCTCAGCAGCCGTTCTGGGGACTAATCTCTCAGACATCATACTGTTCCCTCCATATAGTGCACTACTGTCGGCCACACGGGAAGATAAATAGCCGTAAAGCGATGTAGGTCACTACATGGGGCGTAGCGTGTCATTTGAgatgctgtctctctctttctcagcgGCTTCCTTTTATCCCTTTGTGTCGATGTGATGCCAGCCTCTGAAACAGACATGACTGTAACCGACTCCACaacggagggagagagggagagaggagccTCTCAGATTATTCACAGTATTGATGTCACTGCTGTGGATTGACGGCATAAGGCTGAATTCTACTTAAGTTGTACAATTACCCTTCCTGTACTCCACAGCATTAGTGCAAAGGAGTCGCAACTGTATGAATGtacagtttaaaagatttgccAAGACAAGATCCTCATCACGGTTCAGTACAGACCAGCGTTGCACTCAATTCCACATCAGCTGTAACTTCCATAGACCTCATAGGCTTTATGAACTCTGAACCAAAGTTCATATTAATCTTAACAATATGATAATGGCAGGCAATTTTCGGGTTTCTACATACAGTACTATCTGTGATATCTTGTGTCCTTGCTTGGTAGTTGCCTATACCCATGATACCTTGCACTTTTCGGCCTTGCATATGTTCATTTGTTTGTTCTATGGATGCACACTAACTCTTCAGATATGTTTCTTTTTAgctttgttttaaaaagtgtgGGCGGAAGAGCTTTCCGTCTTGGTTCGGAAGTTAAAGGATTGTATATTAAAGTTGCATTTAATAACATTGTATATGTAACTTGAAATAACTATTGATTaaagagtgaagaaaaaaaa

Function

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159460 lncRNA upstream 1338 27244749 ~ 27244955 (+) True G118303
TU159432 lncRNA upstream 47834 27198183 ~ 27198459 (+) True G118283
TU159427 lncRNA upstream 63721 27179118 ~ 27182572 (+) False LOC120569025
TU159446 lncRNA upstream 69087 27162962 ~ 27177206 (+) False tcf3a
TU159413 lncRNA upstream 190602 26976298 ~ 27055691 (+) True G118265
TU159428 lncRNA downstream 1272 27252543 ~ 27255349 (+) False G118280
TU159429 lncRNA downstream 1272 27252543 ~ 27254913 (+) True G118280
TU159464 lncRNA downstream 7103 27258374 ~ 27261355 (+) True G118306
TU159593 lncRNA downstream 112307 27363578 ~ 27366561 (+) True G118409
TU159604 lncRNA downstream 135625 27386896 ~ 27387956 (+) True G118420
XM_039816588.1 mRNA upstream 50087 27191141 ~ 27196206 (+) True LOC120568858
XM_039816675.1 mRNA upstream 56063 27183776 ~ 27190230 (+) True mbd3a
XM_039816677.1 mRNA upstream 56063 27183777 ~ 27190230 (+) False mbd3a
XM_039816831.1 mRNA upstream 63573 27179097 ~ 27182720 (+) False LOC120569025
XM_039816830.1 mRNA upstream 63573 27179099 ~ 27182720 (+) True LOC120569025
XM_039814863.1 mRNA downstream 10389 27261660 ~ 27281330 (+) True LOC120567815
XM_039814861.1 mRNA downstream 20941 27272212 ~ 27281330 (+) False LOC120567815
XM_039814864.1 mRNA downstream 20941 27272212 ~ 27281330 (+) False LOC120567815
XM_039814865.1 mRNA downstream 20941 27272212 ~ 27281330 (+) False LOC120567815
XM_039814722.1 mRNA downstream 35649 27286920 ~ 27291535 (+) True LOC120567742
TU159378 other upstream 360263 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 476382 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 646221 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 828285 26416508 ~ 26418008 (+) True ccl20a.3
TU159071 other upstream 844215 26399420 ~ 26402078 (+) False G118011
TU159680 other downstream 350753 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 905702 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2717142 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3318124 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3919946 31171217 ~ 31196233 (+) True G119114

Expression Profile