RNA id: XM_039814782.1


Basic Information

Item Value
RNA id XM_039814782.1
length 4268
RNA type mRNA
GC content 0.42
exon number 26
gene id LOC120567772
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19971490 ~ 19993721 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGGCCTATATTGCAGTTTATTGTAACAACTGAATATGTGTATTTTCTCCAAGTGATCCTAATGTATTGAATTTGCTGAGCTGTCtttctgatgttgttgttgttactccAAGACAAATGGCGTATACTGTTGGTGTTTCTTCGGGCTCTAACGGGGACAACATTGTAACTAGAATAAGAATTGtgtcacagttttttttgtaacgttacagttttttttgtttgttttttaaacttgcCAAGTAGCCTATTCAAGAAAATGGTGTGAATGACAGATAAACAGGGGATGGATGCGATATTTAACATACTTGAGCAGTTCAGACTGGACTCCTTCTACAACCAGTTTATCCAGTTGGGCGTAAAGGATGACGTGGATTTCCTGGATGGCGTAACAGATGCAGATCTGAACAATATTGGTTTAAGTCATGTGGAGAAAAACCGTTTTTCAGCGATGAAAAACTTCATTGAAAGAGCTCTGGAGCGCCAAGATCAAACTTTGACGCCTGTGCAGAAACCACTGGAGTCGTTCTGTCTGCAGTACACATATCCCAAATGTCCTCAACCAAAACGTATTGCAGATATGGATCCAGCACAAAACACACTTGAGGATCTGATGTTGAGGATTGGCCATCTTGAAAGTGTTGGAAATTCAAAAGGAGTCTGTCTCTACACAGTTGATGGGATGCCCTTGACAGATGATCCCTACTTCAACACATGGTCTTTGAAAGACAGACATATTCAAAGTGGATCTGTAATTTATGCCATATTCACACCAAAGGAAAACCTGAAACGGGCTCCTCAATTACCAAAGCGAGAGGTTGTCGAAACCTATGGAGGCAATGTGGTTCGATGCCACGTCATGCTCAAGGGAGACTTTGAGGTGACGGTGAACTTGGCAAGTGACACCATAACCAGTCTGAGACTCAAGTTGGCAAATGAAAGTGGAATCCCAGCACATGTCCTACATTACAAAGGTCAAAATTGTGGTGGTGACACTCTGCAAAGTTGTGGGATCTCTGAAGAGTCATCCGTTAACTTCTCTTTGTCCACCTTTTCTAATGAGACTTCACGCAATGAGACGGTCTTCATTAATGATTTTGTGCCTTCAGTCCAACAAACCCAGAAAGGCatcagtgtgtttttgtcttcactttttgttgttaaacatcATTATTCAACAGAGAAACTGAAGAAATTGATATCCTACATAAGAAAACTGACTGGATGTAACCCTCTTGCCCAAAGTTTGCATCAGTTACTCTGCAGGAATGAACCGCTAACCAGGAATCAGAAGATTGCAGTTGTTGAAGGCTTGTACATACTCTTCAGAGAGCTTTTGCCTCAACGTAAAACACAGCAAGAGGAGAAACCCATTGAAGACCTGGATGTCTTTGAGAATTCACTGTACTGCTGGGCACATCTCTTATCGGAAGCAAAGAtgggagacaattacgggattgtaaatgattcacaACAGACCCGAATTGGCCCtgagAAACTGGCATCAGATCAGGAGATCTACGCACCAATCACTCTTATGTCTGAAGATGGCAGCCGCTTCTCTGAACCAGTCAGAGTACCTGGAGTGCCTGGAGCCTTTGAACGAGCATATGTTCGGCAGaaaatcaaagATGGAGAGAAAATTCCAAATTGCACTGAAGACGTTTTGCGAGAAACATCAATACAGAGAGCCAACGACATTGAAAAGGTCTTGCTCAGCTTGCCTCCATTCATCAGAAATTATGCTCTTTGGATTCACTGTGACAGCACGGCTGGTCAGAGCTTCCAGGTAAACATGGAGAAGACCTTTGGAAGTATGGTGGAAGAATTAAAATCTCCTGACAATCAATACATCAATGTGACCCCCCCTCTACATCTGAAGGAGCTAGGACAGTGCGGGTCACGCCTTGTTCTACTGAGTGAAGacaaCATTGGCGTAtgtttgaataaagaaaaaggaTCCCCTGATATGATCGTAGTGCATGATTGTTTGGATGGCCAAAACAAAACCGTGGATGTGAATGAGTTGGCAGCCAGGACTGGAGACCTTAGCGATGACCGAACATTTGTCACAACCAGGACCCCAAAAGAGGCTATACTGGTGTTGATAGACACAAGCTCCTCCATGGAAGAAGAGTGCTATGCAAGTGCAGAAATCAAGAAGATCAATGCTGTGAAGGAGCTCTTTGACAACTTTGCAACAAGGACCATGGCTTATGATTTTTATCATGTTATCGGCCTTGTGAAGTTCGACTCCCTGGTGAAAATTCTCCACACGTTTACCGAAAATCTGGAAAGGTTCAAGGAACACGTACGCAACATTGAGGCCAGTGGATGTACTCTGCTGTATGACGCCCTTCGACGTGGGGCATGTGAGCTGGAAAAGGTCAAGACGAGGTTCCCAGATTGTAGACTTCGCATCATTTGTCTCACTGATGGAAATGATTCTGGATCCTCAATAGAGCCAGATgttgttacagccaaactgctcaAATCTAACATCATTGTGGACTCTGTACTTCTTGGAAATGTGGAGAACAATATGCTTCATGGAATCAGCAATGCAACAGGTGGTTGTTGTTTCAAACCACAGACAATCAAAGAGGGTCTGAAGCTCTTTGAGATTGAGACAGTTCTGTCTTTGGAGCAGAGGAAACTCAAGGAAAAACTTGACCCGTCTTCCATCAGTCAGCATAGTTTGTCCAACATCTTCATTACTCATGGGTATGACGAATGTCCAGAGACATCTTTGCCAAGCCAGTTAAACAGCAAAGTGACCGTGACGGAGAGTGCCCTGAAAAAGAAGCTTAAGGAGTCAAAGGGGTGGTTCCTGGAGAAGGACAAACGTGTCCTGGATGAGCTAAAGAGTCTGCATTGTAACCCACATCCTTTCTTCAGAGTCTTTCCATCGGAGTCAGACTTTACATTCTGGAGGATTCTCATGCAAGGCCCTCCTGACACACCGTACAAGAAAGGAGTGTTTGAGCTGTACTGCCACTTTGGTCCTGACTACCCAGCGAAGCCTCCACTCATTCGCTTTGTCACACAAGTGTACCACTGCAATGTTAACAGTGTGGGTCGCATCTGCCACAACATATTTGACCGCAACTACAATGCCCACATCACCATGAGAGAGATCCTAGAAGCTGTGTATGGACTGCTCATCATCCCTGAGCCTGCTGATCCACTGGACAGcaTTTTGGCTGAGGAATTCCTGACGAGCCGTGAGACGTATGAACTAGAAGCTGAGAAACATACAGAGGCAACTGCAGAAAAGTCCCTAGATGACATGGAGAAACAATTTGTGGAGTCTGTGCAACAGTTTATACCCCAACATCTGATCTGTCCACTCACCAAGAAGATGTTTGTTGATCCTGTAAAAACGGTGTATGGCACCGTGTATGAACGCAAGGCCATTGAGGAACATCTAAAGCAACACCAGTACGATCCGATGGCTGGCCCCGAACACGTGCTTGAAATGAGTAACATCAGAGCGGACCAGGACATGAAGAAAATGGTGACGGATCATCGTTCTCGTCAGATTCAGTTTGACGTTGCAGctgagtagtttttttttttttttttttaaatcaggttCCTGTGAAAAAGGAGATTGACCATCTACTCATAATTTTTATCGATAGAAGTTGttcttatttaatttatattggAACATTATTTGTTCAGTCAGTTGGGAAGTGTTAGTGCAGGttattttcattaatttgacTCTTTTCCTGACATCACTTCTACTTTCATATGAACAGTGatggacaatttttttttctgtttcgtTTGGAGTTGATTGTGCTTCTAACTTTTGAGTGTTCAATGTTCTTTTAAATGCTATCCTAGTTCCTTATTTACAGTTTTATCACTCAAATATGTTGTACATCTGTATTATGGAGTATACAGTAGTAAATAATTTCAGTTAATTACATTTGTCTTGTTAGTGATGGCAGAACAGTAAAGGATGAGCATTTTTTCTATCGTCAATTTTAAATATACGGACATGCTTATTTTCAAATAATCAATGTTGACGCTGATGTATATTGATGTGTTATAAGTCACACGCACACAAGTGGGATTTTTATGCAAGCATGCCATAGCCTGATCTTTATGTGAAAGGAGCAATTCATATTTTTCACTTTGAAGCAAGGAATGTTAAAGaccaaatattatattatataccaAATAAATTGTTGATGTTAACTTTCAAATGGTTCAATTTCTCTTTACATTGTAATTAAAATTTGTATATACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156782 lncRNA downstream 34077 19924212 ~ 19937413 (-) True G116292
TU156784 lncRNA downstream 89081 19879905 ~ 19882409 (-) True G116293
TU156743 lncRNA downstream 219296 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 292060 19679189 ~ 19679430 (-) True G116268
TU156633 lncRNA downstream 323367 19645322 ~ 19648123 (-) True G116181
TU156823 lncRNA upstream 332073 20325649 ~ 20325874 (-) True G116328
TU156868 lncRNA upstream 393922 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 396781 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 586944 20580520 ~ 20585677 (-) True LOC120568747
TU157004 lncRNA upstream 775059 20768635 ~ 20771028 (-) True G116484
XM_039814824.1 mRNA downstream 598 19968416 ~ 19970892 (-) True LOC120567783
XM_039814825.1 mRNA downstream 3932 19963826 ~ 19967558 (-) True LOC120567785
XM_039814816.1 mRNA downstream 8727 19956780 ~ 19962763 (-) True ftr67
XM_039814793.1 mRNA downstream 15158 19947240 ~ 19956332 (-) False LOC120567774
XM_039814791.1 mRNA upstream 549 19994125 ~ 20020226 (-) False ccdc24
XM_039814822.1 mRNA upstream 1957 19995533 ~ 19998081 (-) True LOC120567781
XM_039814789.1 mRNA upstream 4717 19998293 ~ 20020261 (-) True ccdc24
XM_039814790.1 mRNA upstream 4717 19998293 ~ 20020198 (-) False ccdc24
XM_039814826.1 mRNA upstream 32483 20026059 ~ 20207494 (-) True b4galt2
TU156767 other downstream 175781 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 506110 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 748764 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 1036013 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1125213 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 1014473 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2268422 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2269547 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3436790 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3475044 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile