RNA id: XM_039814790.1


Basic Information

Item Value
RNA id XM_039814790.1
length 2295
RNA type mRNA
GC content 0.45
exon number 10
gene id ccdc24
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19994125 ~ 20020261 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTGTTTGGTAATTACTTATGTCTACAAAGCATGTCATTGATATTTATAGCAACTGGAACGTTTACCCTGGATACCTCAGACTTGGGTCGTTGCAGTTAAGATTACCATTCCTATGCAGTCTCACGATGGAAACCAGCTCTGGCGCCCTGGCCAGTCCCTGTGGAGCCTGGTCGCTGAACATGTTCCTGGGTCAGAGTTGCCAAAGATCCAAGCAGCACTGGGCCACTCCCTGGTTGACATGTACACAGAGGTGCACACTGAGATGGAGATGTGGCACAAGATGTGGCAAGAGAGCCAGCAAGGAAACAATCGCAGCAGGACAGGGACCCCGCTCCCACGTCAGCAGGCCTCCCCTCTAGCCGACCCCCCTGCAGTCAAAGAGCTGGTGAGAGCCGAGGTGAAGATGTTACTGCAGAGTCTCAGCAAGAGAGCCAGCAGGGAGGGGAGAGATGGTGAGGAGCTCTTGTTTCGGTACAAACCTGAGACGGTGGACTACGCTCTGAGTCACCTTGACAGCTGTTACAGAAACTGTACAAACCCTGAAAATGCTAACAACATAAGCAGACCGAGCTCTCACTGTTCAGTCCAGTCTAATGCTGAAGATGAGATTGAGGCAATGAAAGACAAGTTGAATGTCATTGACATTGACCAGGTGGTGGACCGCCTCAGgtCTATCCTAATGGAGGAATGTGAAGCATTGAACAGGCTGGTGAAGCATTTCAAGggaaatataaaacacaagtgTCGGAGTCAATGGGAATTTCATCAATCAGAACCTACACTTGCAGATTTGAAAGAGCTAAGAGGAGCTATACAAATGGACTTGGATCTTTACCCCTCTTCGCTTGCTGCTTTACCTTCAgcttcctcccctctccctttgAATCAATTGAAAAACAGACTGTCAGCGGGACAAAGGGTTTCTGATGAGACTCTGCGATCTTTAAGCGCTACATCAGCCCTAAGACCacatccacctcctcctctgtgCCATACTAAACCTAGGCCACCGCTCGGGGGTCCTCCTAACAAGCCATCTGCATCAGTTAAACTCGTTAACAGTTCATCACTGTCTAGGACTCATGGACACCATAGAAGCACATTAGCCTCCACTGGAGCTAGGAAAACACAAACACCTATCTGCAGCAGGATCGTCACTTCTGGGCAAGCAAACAACCATGTCCTCACTTCAATCCCAGGGCCTGGCAGTGACCAGATGACGGTTAAAACCGTACACCATGACAATCTTTCCTCAGAGCAAGATGGTGGTGGTCTCCACTGCATGACCCCGACTTCTAGTCCAAGTTTTCAAATAAAACCTCCAAGAAAGTCACGCATCCATGAAACCCATTTGTCATCCCATCGCAGTGTTCACAACCTGAGCAGAAAGTGTGATTTGTCACCACAGATGAAGAGAAATGGCAGCCCGGCCTGGAGGTCAAGAAACATCAATACTACTCCCTCAATCCCTAACTTGGATGCAGGCAGTAACAGCAGCGATGCTGACCATCCTGTGTCAAAGACTGGGAAATCAAAGACACAAAATGAGCGACAGAATAGTACCTGTGGAGGTAGTTTAGTGTCAACAACAGTGCAGACATATAATGACAGAAGGAAGAGTACTTCTGAGAGGTTTCAGTCTGAAACTGGGAGCTCTCCTGCACATACTGGCAGTAGGAACAGCAACAATGGAATGGATAGAAGTAAAAATGGTCATCTTGGTAAAGATGTCATCCAACAGCAAAGCTTAGTAGCCACATGCACCCATCCAGCGTCGATACGGATAAATGGACAATTCTTTACTTCCCACAAAAGACCATTTGAGGGCACCACAAGTCAGCAAATCAGCGAGTTTTACCAGCCAGTCCCTCCTGCAATGTCAACTTGAAGTCAGCCACAGACCAGAGCAGAAGGATAGTCTGGTAGTTAGTGCCATTGACCTGTtgcattaagaaaaaaaaggaagaaaaataaatatagtaTGTTGCAGCAAGAATTCAAGAGAGGTTTGGTATTGTAGTAGATAAGATGGCAAACTATTGAACATACTTTATCTACATAGTGATTAGACCTCTCATAATCACTATTATATTTGGAGCATGATTACTTAACAGTTGCATAAATTGTTTTGCTCTGGAATAATTTTACAgctatatcttttttttctcccataaAGCTTCAATAAAACATAACTTGAACTCTGGTATCTACATACATGGAAAATGAGTGCTTGAAATTTTGCAGTGTCTAAATATTTGATAGGAAAATGTGTGTTGTTAAGAGCCCTGCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156782 lncRNA downstream 60880 19924212 ~ 19937413 (-) True G116292
TU156784 lncRNA downstream 115884 19879905 ~ 19882409 (-) True G116293
TU156743 lncRNA downstream 246099 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 318863 19679189 ~ 19679430 (-) True G116268
TU156633 lncRNA downstream 350170 19645322 ~ 19648123 (-) True G116181
TU156823 lncRNA upstream 305451 20325649 ~ 20325874 (-) True G116328
TU156868 lncRNA upstream 367300 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 370159 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 560322 20580520 ~ 20585677 (-) True LOC120568747
TU157004 lncRNA upstream 748437 20768635 ~ 20771028 (-) True G116484
XM_039814822.1 mRNA downstream 212 19995533 ~ 19998081 (-) True LOC120567781
XM_039814787.1 mRNA downstream 4719 19971490 ~ 19993574 (-) False LOC120567772
XM_039814826.1 mRNA upstream 5861 20026059 ~ 20207494 (-) True b4galt2
XM_039816380.1 mRNA upstream 188512 20208710 ~ 20218795 (-) False atp6v0b
XM_039816379.1 mRNA upstream 188512 20208710 ~ 20217298 (-) True atp6v0b
XM_039816616.1 mRNA upstream 316500 20336698 ~ 20339393 (-) True ift22
XM_039814622.1 mRNA upstream 328311 20348509 ~ 20351231 (-) False LOC120567661
TU156767 other downstream 202584 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 532913 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 775567 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 1062816 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1152016 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 987851 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2241800 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2242925 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3410168 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3448422 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile