RNA id: XM_039814791.1


Basic Information

Item Value
RNA id XM_039814791.1
length 2267
RNA type mRNA
GC content 0.46
exon number 10
gene id ccdc24
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19994125 ~ 20020261 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGGCACAGGTGGTCATCTGGTGTGTTGATTGTTTGGTAATTACTTATGTCTACAAAGCATGTCATTGATATTTATAGGTAATTTGCTGGATTGTGTCATTTTGTAATGCATTTTTATCGCGTTATAATTAGAAAAcaagtctgtttttttctgtaatacCATAGACTGTGGAACACTAATGTTGACAGTAACGAGAGATCTCGCGATATCTCCTCCTAGCAACTGGAACGTTTACCCTGGATACCTCAGACTTGGGTCGTTGCAGTTAAGATTACCATTCCTATGCAGTCTCACGATGGAAACCAGCTCTGGCGCCCTGGCCAGTCCCTGTGGAGCCTGGTCGCTGAACATGTTCCTGGGTCAGAGTTGCCAAAGATCCAAGCAGCACTGGGCCACTCCCTGGTTGACATGTACACAGAGGTGCACACTGAGATGGAGATGTGGCACAAGATGTGGCAAGAGAGCCAGCAAGGAAACAATCGCAGCAGGACAGGGACCCCGCTCCCACGTCAGCAGGCCTCCCCTCTAGCCGACCCCCCTGCAGTCAAAGAGCTGGTGAGAGCCGAGGTGAAGATGTTACTGCAGAGTCTCAGCAAGAGAGCCAGCAGGGAGGGGAGAGATGGTGAGGAGCTCTTGTTTCGGTACAAACCTGAGACGGTGGACTACGCTCTGAGTCACCTTGACAGCTGTTACAGAAACTGTACAAACCCTGAAAATGCTAACAACATAAGCAGACCGAGCTCTCACTGTTCAGTCCAGTCTAATGCTGAAGATGAGATTGAGGCAATGAAAGACAAGTTGAATGTCATTGACATTGACCAGGTGGTGGACCGCCTCAGgtCTATCCTAATGGAGGAATGTGAAGCATTGAACAGGCTGGTGAAGCATTTCAAGggaaatataaaacacaagtgTCGGAGTCAATGGGAATTTCATCAATCAGAACCTACACTTGCAGATTTGAAAGAGCTAAGAGGAGCTATACAAATGGACTTGGATCTTTACCCCTCTTCGCTTGCTGCTTTACCTTCAgcttcctcccctctccctttgAATCAATTGAAAAACAGACTGTCAGCGGGACAAAGGGTTTCTGATGAGACTCTGCGATCTTTAAGCGCTACATCAGCCCTAAGACCacatccacctcctcctctgtgCCATACTAAACCTAGGCCACCGCTCGGGGGTCCTCCTAACAAGCCATCTGCATCAGTTAAACTCGTTAACAGTTCATCACTGTCTAGGACTCATGGACACCATAGAAGCACATTAGCCTCCACTGGAGCTAGGAAAACACAAACACCTATCTGCAGCAGGATCGTCACTTCTGGGCAAGCAAACAACCATGTCCTCACTTCAATCCCAGGGCCTGGCAGTGACCAGATGACGGTTAAAACCGTACACCATGACAATCTTTCCTCAGAGCAAGATGGTGGTGGTCTCCACTGCATGACCCCGACTTCTAGTCCAAGTTTTCAAATAAAACCTCCAAGAAAGTCACGCATCCATGAAACCCATTTGTCATCCCATCGCAGTGTTCACAACCTGAGCAGAAAGTGTGATTTGTCACCACAGATGAAGAGAAATGGCAGCCCGGCCTGGAGGTCAAGAAACATCAATACTACTCCCTCAATCCCTAACTTGGATGCAGGCAGTAACAGCAGCGATGCTGACCATCCTGTGTCAAAGACTGGGAAATCAAAGACACAAAATGAGCGACAGAATAGTACCTGTGGAGGTAGTTTAGTGTCAACAACAGTGCAGACATATAatgacagAAGGAAGAGTACTTCTGAGAGGTTTCAGTCTGAAACTGGGAGCTCTCCTGCACATACTGGCAGTAGGAACAGCAACAATGGAATGGATAGAAGTAAAAATGGTCATCTTGGTAAAGACGTCATCCAACAGCAAAGCTTAGTAGCCACATGCACCCATCCAGCGTCGATACGGATAAATGGACAATTCTTTACTAATTCTTTACAAAAGACCATTTGAGGGCACCACAAGTCAGCAAATCAGCGAGTTTTACCAGCCAGTCCCTCCTGCAATGTCAACTGGAAGTCAGCCACAGACCAGAGCAGAAGGATAGTCTGGTAGTTAGTGCCACTGACCTGTtgcattaagaaaaaaaagggaagaaaaataaatatagtaTGTTGCAGCAAGAATTCAAGAGAGGTTTGGTATTGTAGTAGATAAGATGGCAAACTATTGAACATACTTTATCTACATAGTGATTAGACCTCTCATAATCACTATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156782 lncRNA downstream 56712 19924212 ~ 19937413 (-) True G116292
TU156784 lncRNA downstream 111716 19879905 ~ 19882409 (-) True G116293
TU156743 lncRNA downstream 241931 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 314695 19679189 ~ 19679430 (-) True G116268
TU156633 lncRNA downstream 346002 19645322 ~ 19648123 (-) True G116181
TU156823 lncRNA upstream 305423 20325649 ~ 20325874 (-) True G116328
TU156868 lncRNA upstream 367272 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 370131 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 560294 20580520 ~ 20585677 (-) True LOC120568747
TU157004 lncRNA upstream 748409 20768635 ~ 20771028 (-) True G116484
XM_039814786.1 mRNA downstream 404 19971490 ~ 19993721 (-) False LOC120567772
XM_039814782.1 mRNA downstream 549 19971490 ~ 19993576 (-) False LOC120567772
XM_039814787.1 mRNA downstream 551 19971490 ~ 19993574 (-) False LOC120567772
XM_039814783.1 mRNA downstream 1338 19971490 ~ 19992787 (-) True LOC120567772
XM_039814784.1 mRNA downstream 3889 19971490 ~ 19990236 (-) False LOC120567772
XM_039814826.1 mRNA upstream 5833 20026059 ~ 20207494 (-) True b4galt2
XM_039816380.1 mRNA upstream 188484 20208710 ~ 20218795 (-) False atp6v0b
XM_039816379.1 mRNA upstream 188484 20208710 ~ 20217298 (-) True atp6v0b
XM_039816616.1 mRNA upstream 316472 20336698 ~ 20339393 (-) True ift22
XM_039814622.1 mRNA upstream 328283 20348509 ~ 20351231 (-) False LOC120567661
TU156767 other downstream 198416 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 528745 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 771399 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 1058648 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1147848 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 987823 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2241772 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2242897 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3410140 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3448394 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile