RNA id: XM_039814793.1


Basic Information

Item Value
RNA id XM_039814793.1
length 2885
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC120567774
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19947240 ~ 19956332 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACACCCACTCGCCACCTCATGCAGCTGCTCACAGGAGAGCCATTAATTAGTCACGGAAAAGAAAGCATTTTGAGCCAGACTGTTTCAACGTAGATATAGAAACAGGAACGGAGAAATGCCCGTAGTGAAtacattattattcttttttaaggtctgctcgacctaattgcatttcaacataatacatttacaccaaacctacagtaggcctaggcCTAGCTAGGCCACGCGCAGAACAttcattgtatgttatttcataagtgaaagaatggcttttgttgtggatttgctttacTCTGAGCTCGAAGAGAGACTTGACTCGCTCGTCTCTGAATGAATCCGATCCACTCATGGTGACCACGTAGCCGGCTGATAAGCGGGACTGACTGACTCGCGCGAGCATcgacaactcacgagtcatcgagTGGACCGCGAGCTTCCGACTCTGAGTGTGCGGGTTCTCTTCTTCCATGGTCGGATAACCTGTCtcggactgtctctctgctcactcaggcgCTTGTGGATTTGTTACCCTGTTgcctacgaaattgtaagttataaagccttttgcagctaagatggctaggactagtagtagctaatgttgcaagaggtttgtgtgtggcgctgttatcattttagattgaattgtaggaGGACTCACCTGAACAGGGTTAAAGATACTAGAGACTCGCGTTTCGTGATTCAATTTAAAAACTCTGGTTAAAGAGCCGAGTTTatcacgactcaaacaggtgTAGGTGAAACCTGAGAAGCTGTAATCAGCACACCTGTTCGCTACGCCCATCTTTGTCCCTTCCCGTTTCTGTTCGGAGTGTATAGGAAATGGCTGCAGCAACTATTTCTATTGAACAAGACCAGTTTTGTTGTTCAGTGTGCCTGGAGGTTTTAAGAGACCCGGTGACGAttccctgtggacacagctactgctTGGACTGCATTGAAGATTACTGGACAAAGGTCAAGCAGAAAGGCCAGTACAGCTGCCCACAGTGCAGGCAGGTGTTTAATCCCAGGCCTCTGCTGAGTAGAAACACAGTTCTGGGCGAAGTGGTGGAAAAGTTTCAGAGATCTGGATTTCAAGACGCAGCTCGACACTTGGCCAAACCCGAGGAAGCGAAATGCAGTGTTTGCACATTGAGAAAAAGCAAAGCTGTAAAATCCTGCCTTGTGTGCTCCGAGTCTTACTGTGCTGTTCACTTGAGAGTCCACGAAGAACGCTTTCATGGGAAGGTCCATAAATTGGTCCCAGCCGTGGATCAGCTGAGGGAGAAGCTGTGCCCACATCATGATAAATCCCTGAGGCTGTACTGTCGCACTgaccagcagtgtgtgtgttcccagtgTGTCAAAGAGAAACACAAGGGCCATGATGCAGTCTCAGTGGTGGATGAGAGAGCAACACAACAGAAAAAACTCCAAGAAGCCTCTTTGAAGTCTGTGCAGAAATTGAAGGACACGGAGAAGGAACTTAGATACGTTGTCCGATACATTAAGCACTCGACGGAAGCAGCAGTGGAGGAGAGCGAGAGGGTTTTCTCCAAGTTGATCCGCTCCATAGAGAAACAAAGCAGTGAGGTGAAGGAGGTGATGAGAGTCCAGGAGAGAGCAGCTGTCAGTCAGGCCGAGGAGCTGCTGGAGAAGATCCAGAGGGACGTAACCGAGCTCAGGAGGACCGGTGCTGAGCTGGAGAAGCTTTCTGGCACTGAGAACCACATCCACTTTCTTCAGAAGTGCAAGTCTCTTCATTTCCCTACAAAGACTGTGGAGATGCCCAGCACTGATGCACTTCAATATTTGATGTATAAAACCATGAGAGGAGCCCTAGCTGATCTCAAAGACAGTCTGGATGAAACACTTGAAAGAGAATTCAACAGGATCTCTGATAAAGTCATTTCACTGAAGGAGACCAGCAATCAAAGTACCTCTGAAAAGACTAAAGTAAAAGACACTGAGGTACCATACAACTCAGAACCGAAGACAAGAGCTGATTATCTACAATATTACAACGATATAACCCTGGACCTGAACACAGCCAACCCTTATCTAAGCTTCTCTGACGGTCAAAGAGAGGTGACCACACGTTCGGAGCCACAGCCATACCCGGACCATCCGCATCGCTTCACCAGCTGGGCCCAGGTGCTGTGCAGAGCTGGGATGGCTGGACGCTGCTACTGGGAGGTAGAGTGGGCTGGTAAAGGAGGGGTTTCCATCGGCGTCTGCTACAAAACCATGGGCAGGAGTGGAGCAGGGAGCGACTGTAAGCTTGGACACAACTCCAAATCCTGGAGCCTGGACTGCTCTTACTCAGTCTGTTCATTTCAGCACAATAAGGAGGGTTTGACCATCGCTGCTCCGTGCTGCAGCAGGATAGGCGTGTATCTGGACTTCAGGGGTGGGACTTTGTCTTTCTATAATGTTTCTGATACAAGGGTTTTACTCCATAAAGTCAAGACTACATTCACCCAGCCTGTATACCCAGGATTTTGGGTGGGTTTGAGCTCTACTTTGAGGCTGTGCTCTCTTTAAATGAAATGACTGCACTCCATCAACGGTTCTCAAGTAACTTTGTAAATATGGGGTTCAAAATATTAATGTTGACTGAGAATAATAATGAAACTGAGACCGAGGtttgtgtttaaaatgtttattttaataacCGTGCAACTTGGGAACAGCAGCAACACTTTGGTGCGGTAGGTAACAAGCTTATTGAAGGCAGCATCATCCACATCCTGGATCTGCAAAGGAAGACATTTTCATAAACTCAACGATCTATATTTGTTTGAGCACATTTATGTAATAATATAGGGATTTGTTGTGCATCAAATCCAATTGTAAATAAACAATTTGTTCATTCTG

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156782 lncRNA downstream 9827 19924212 ~ 19937413 (-) True G116292
TU156784 lncRNA downstream 64831 19879905 ~ 19882409 (-) True G116293
TU156743 lncRNA downstream 195046 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 267810 19679189 ~ 19679430 (-) True G116268
TU156633 lncRNA downstream 299117 19645322 ~ 19648123 (-) True G116181
TU156823 lncRNA upstream 369317 20325649 ~ 20325874 (-) True G116328
TU156868 lncRNA upstream 431166 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 434025 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 624188 20580520 ~ 20585677 (-) True LOC120568747
TU157004 lncRNA upstream 812303 20768635 ~ 20771028 (-) True G116484
XM_039814817.1 mRNA downstream 30377 19882902 ~ 19916863 (-) True LOC120567779
XM_039814818.1 mRNA downstream 151481 19793342 ~ 19795759 (-) True xcr1b.1
XM_039814819.1 mRNA downstream 151559 19793342 ~ 19795681 (-) False xcr1b.1
XM_039814821.1 mRNA downstream 152136 19793342 ~ 19795104 (-) False xcr1b.1
XM_039814724.1 mRNA downstream 155337 19789625 ~ 19791903 (-) True LOC120567744
XM_039814816.1 mRNA upstream 448 19956780 ~ 19962763 (-) True ftr67
XM_039814825.1 mRNA upstream 7494 19963826 ~ 19967558 (-) True LOC120567785
XM_039814824.1 mRNA upstream 12084 19968416 ~ 19970892 (-) True LOC120567783
XM_039814786.1 mRNA upstream 15158 19971490 ~ 19993721 (-) False LOC120567772
XM_039814782.1 mRNA upstream 15158 19971490 ~ 19993576 (-) False LOC120567772
TU156767 other downstream 151531 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 481860 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 724514 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 1011763 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1100963 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 1051717 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2305666 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2306791 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3474034 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3512288 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile