RNA id: XM_039814817.1



Basic Information


Item Value
RNA id XM_039814817.1
length 2057
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120567779
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19882902 ~ 19916863 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTACTCCCACAAGTTTGCAGCTTGCAGGGACAATATGGGGATTCATCTATTTTAAGgagaagtagcctacattttcaTACCGGGGCTTTAACGAATAAGTCAGTCTTTATAAGAGGCTCCAGAGGAACAAATAACCTGGATTTGCGCtcacatcatcaccatcatccgATGAGGGATATAAAGAAGACAGATGAGAAAATGGAAGTGTGTTGTAAGGCGCTGCCGGGACGACAGGAGACATTCGTAGTCCTCATCTTTTATCTTCATCTGTGGTACAGGCCAATTGCTGAAGCAATTCATCCGGACTGCGCCATCATCTCTCAGCACCTGAGGGCTCGGGAGGTTTGCAGCCAGACGAGGAAGAGCGAAGCGCAAAACAAGACCGACCACAGCGGATGTAACACAGAGTGGGATGAGATTGGCTGCTGGCTGAGAGCTGAAGTTGGGCAGGTGGTCAACATATCATGCTCTGACGTCTTCCAGCATTTCTCCAGCAATCAAGGGTATGTTTACAGGAACTGTACGGTGGATGGCTGGTCAGAAATGTATCCACCCTACGACGAGGCCTGTGCTTTCAGTGACAACAGTGAGCCTGAATCTGAGACGAGTTACCTCTCTACATTCAGACAGGTTTACACTGTGGGCTACGCCACCTCGCTCATCTCCCTCATTACAGCCATAGTGGTGTTCACAGCCTTCAGGAAGTTCCACTGCACCAGAAACTACATCCACATCAACCTGTTCTCTTCCTTCGTCCTGAGAGCCAGCGCTGTTTTCATTAAAGACACTGTTCTGTTTGCTGATGAGACCCTGGACCACTGCTCGGTGTCCACGACAGCGTGCAAGTCAGCCGTGGCTTTCTTCCAGTTCAGCATCCTGGCCAATTACTTCTGGTTGCTGGTGGAGGGCATGTATCTACAGACCCTGCTGGCCCTATCCTTCGTCTCTCAGAGGAAATACTTCTGGTGGTACATCCTGATTGGATGGGGGCTCCCGTCAACAGCTCTTATACTTTGGGTGTTGACCAGATTCTTCTATGATGACAGAGGTTGCTGGGATGACACAGACAATGTTCCTATTTGGTGGATTATCAAAGGACCAATAACAGCCACGCTGCTGGTCAACATAGTCATCTTCATCAACGTGATCCGGATCCTGGTTCAAAAGCTTAAATCTTCAGCGATGGCCGGGAACAATGACACCAGACACTTTATGAGGCTGGCTAAATCCACCCTGTTCCTCATCCCTCTGTTTGGGATGCACTACACAGTATTCGCCTTCCTGCCTGAGAACACTGGAGTAGCAGCCAGACTCTACATCGAGCTGGGGCTGGGATCCTTTCAGGGTTTTGTGGTGGCACTGCTTTACTGTTTCATGAATGGAGAGGTCCAAACTGAACTGCGGCGATGGCTGTGGAAGTGTCACAATCAAAATCATCTCACCCCAGCCAAGCAAAGTATCACTCAGATCACAGTTCGAGCCCGCGGGGGGCTCGGGCGGCCTCCTTCTAGTGGCAACATCTCTTCAGTATGATTTTTAAGAGAACATCCATGAGATACAATTTGTTGTGAAATGTGAGAATGTCAAAGAAACTATCAGAGGCAAAGCTCAATCTGCTGATGGCATTAATTCAACAACGCCTCTGTGAGAGGAGTGTAATAAACACTGGTGAGTGATTGAGAAAATATATATCAGTGTCAGCAGCAGCAACGACCATGATAGCACACATCACACACTGGTTCTTGATTTGTGAGGATACCATGGTGACACTGTGgaaagacaacagtagagacagAGGTGGCCCAGAGCTTTCAGGAGGATGATTTTACATGGTTCTGTTTACATTTTGGAGTACAAAAATGAGCAAATGTTGAGGGATTATGTAGAGATGGCTGTGGAAACAATGAGTGTTTGAACTTTGCTTAATTATGTAAAATGAGGTTAACTTGTTCAATTGTTTTGTGCTGCACTGAACATAAGCAGTGTCATTATTTCGTTGCAGGCTGAAAATATGTGCAGGACTGATATGGACtgaatttaaatagctcattactgta

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU156784 lncRNA downstream 493 19879905 ~ 19882409 (-) True G116293
TU156743 lncRNA downstream 130708 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 203472 19679189 ~ 19679430 (-) True G116268
TU156633 lncRNA downstream 234779 19645322 ~ 19648123 (-) True G116181
TU156632 lncRNA downstream 242245 19639526 ~ 19640657 (-) True G116180
TU156782 lncRNA upstream 7349 19924212 ~ 19937413 (-) True G116292
TU156823 lncRNA upstream 408786 20325649 ~ 20325874 (-) True G116328
TU156868 lncRNA upstream 470635 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 473494 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 663657 20580520 ~ 20585677 (-) True LOC120568747
XM_039814818.1 mRNA downstream 87143 19793342 ~ 19795759 (-) True xcr1b.1
XM_039814819.1 mRNA downstream 87221 19793342 ~ 19795681 (-) False xcr1b.1
XM_039814821.1 mRNA downstream 87798 19793342 ~ 19795104 (-) False xcr1b.1
XM_039814724.1 mRNA downstream 90999 19789625 ~ 19791903 (-) True LOC120567744
XM_039816461.1 mRNA downstream 281430 19593467 ~ 19601472 (-) False tcea1
XM_039814793.1 mRNA upstream 30377 19947240 ~ 19956332 (-) False LOC120567774
XM_039814792.1 mRNA upstream 30377 19947240 ~ 19956328 (-) True LOC120567774
XM_039814816.1 mRNA upstream 39917 19956780 ~ 19962763 (-) True ftr67
XM_039814825.1 mRNA upstream 46963 19963826 ~ 19967558 (-) True LOC120567785
XM_039814824.1 mRNA upstream 51553 19968416 ~ 19970892 (-) True LOC120567783
TU156767 other downstream 87193 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 417522 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 660176 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 947425 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1036625 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 1091186 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2345135 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2346260 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3513503 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3551757 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile


XM_039814817.1 Expression in all Baseline Samples

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XM_039814817.1 Expression in each Bioproject

Bar chart with 7 bars.
XM_039814817.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 12.
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