RNA id: XM_039814846.1


Basic Information

Item Value
RNA id XM_039814846.1
length 2374
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120567803
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14561507 ~ 14564705 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttTCTTCAGATTCAAAATGTTCCACCTCCGTCCTTCTGCGtgttcactcacacacagctgatgacaaaACGTCTCACAGCACCTTACACTGAGGATGCAGGGAACTTCTTCACCTTAATCCACGGAgaagaagtgtttttttcttcttcttttctgtatTCATTCGCCTGCTGCATCATGAGCGCTGAATGCAGCAGTTACCACAGCGCTGACGGCGTGTTTGTGGACGGATTCTCATGCCCCAGACCGGGCAATGCCGTTGCTGCTGTCTACTGCTGCGGATTTAACGATGTCAAGTATTGCTGTGACGATCCCAACAGTTTTTTCCCGTATGAGTACGGATACATGTGGTGGCTGAGtaTCGGCGCTCTGGTTGGTCTATCCATTGCAGCGGTGGTCCTCCTTGCCTTCCTCATcactgtgtgtgtcctctgctACCTTTTCATCGCCACCAAACCCAGTTGTCTTGACAACGGCCTACCCCTCAGAACGCCAGGAGATCCCAGTGAAGGACCCAGTCATGGGAGAGCGACCTGCGTCTCTGGTCCACAGGGATTCAGGAAACACTTCATGAGCAGGAAACTGGACTGTGATAACCAGCCGCCAGACCCCGAGCTCCTGTTCCAGAGGTGTTTCACAGCTACCGCCACCGGTCTGAAAGTGGAAAATCCTTCGTAGGCCGCAGAGAtacttgttgttaaaaaaaaataaaaaatgaggcCAGCAGTCCAGAAATCAAGAGAGTCAGTGTGTCTGAAGGCAGAATGCGCTACCAGGGAACTgctgggacaaaaaaaaaaaacactctgaggGCTTTGAATCAAAATTGCGTAAGCGTACACAATGAAAGCTCTCAAACACATGGATTCAATTTCTTCAGACACTAAATGACTCATAACGCATACGTGTTTCAGCACCCTGCAGCAGTAATTAAGAATGGATTGGAACGAATTATCCACCATCTTCTTGGAACATAAGGTGTTTAAGTGGCCTCAAGAAAGCCAAACCCTTGTTGAATTATTAAGGCATATGGTAGGGGGGACTGAGGACATAGGCCTGTTAAGATCCAGTTTACACTCAGGATGCACAGTTTCATGTGAGCCAAGACAACAGCAGAGTCTAGGACAGCTAGGCTATAAAGTCAGGGTGCACCCTGGTGAAGTAGGGTGCTGTATACTTGTAACCACATCTGCTATATTTTACTCAGGGACTGAAGGATTTGTGGGGAAGCTCTACAGTGTGAGGAGACCAGAAAAATGACAGCGCTGGTTATTAATTCAAGTGCATTAGATGACAAGAGACTTCTTGTAATCATTAATGTTTGACTGTCTCCTACCAACACtcagagctgtttttttttttttaaccaagacCAATTTCAGCCAGAGACACATCAAGGAactgacttttctttttaaaagatgAATTTTGGCAGTTTTGCCTCCACAGTAATTGACAGCTGCCAGTGAAAGAGGCAGACACGGAAATAGCAGAGAGAGTGGTATGACAAAGGTCCCCAGCTGGAATGAATTGAACATTTATTGCAAATGGTTGTACACTTTGCTCTTTACAGCAATGGCGCTCTCAAGATAATCTAAGTCTCAACATGGATTCTGCTGAGATGTGATAATAAAGACATACAAGAACACTAAATCTTATTTAAATTGACAATACCAAAATGATAGCACATAAGGAGGACGTTGGGGCAGTGGAGCTTGCTGTGGCAGTATCAGAATAGCAACAGTGATAGGTGCCAAGTTAAAATGGCCCACTCTAAACCTGCCTAGACCTGCATGAATATGATTGGATATAAATAGTGAGCTGAGTGAATGAGCCAGGGAATGTGAAGCATGCAGTGTTGTATGGCAAAAAAGTTGAACCTGGCTCAACTTTTCCAATCAAATCCATGCATGAGTACACATTCCTGGTAGATTACTTCACAACAAGTACACCATGTTTCTAATGATTATGTGATTAAAGATAAGAATTGTCACTGTGAGTTGTAAATTCACACATCTGCTACTCAAACTAGACTTTCTTGATTGTATTTCATAGCTCACCTGAAAGAGACAATCAGTAGGATTTtcctaaaaaaacaatgtattctAATACAAAAGTAATCTCTCTCAATCATTACTTATGAGCCACCAGAAGCGTGTGGCGGTGTCTGTATCTACAGGGACCCTGCCCTCTGACTGGATTTTCTTACTTTACTGTGTTGGGGATGGTTCTGGGAGTCAGCCTCTATAAAAACCTAGCGACCAGGTGCCAGATTGTTACCACACATCCAATACGGAGCTACAAAAATGGTAACCAtcatggacctttttcacagcagacattttgacttgtcatagtaggaaaagcacagcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154511 lncRNA downstream 43614 14517476 ~ 14517893 (-) True G114544
TU154487 lncRNA downstream 95259 14456624 ~ 14466248 (-) False G114530
TU154488 lncRNA downstream 102582 14418851 ~ 14458925 (-) True G114530
TU154504 lncRNA downstream 113574 14440881 ~ 14447933 (-) True G114538
TU154466 lncRNA downstream 240744 14319343 ~ 14320763 (-) True G114518
TU154601 lncRNA upstream 48908 14613613 ~ 14618164 (-) True LOC120568687
XR_005640749.1 lncRNA upstream 49727 14614432 ~ 14618224 (-) False LOC120568687
TU154619 lncRNA upstream 124752 14689457 ~ 14690066 (-) True G114633
TU154623 lncRNA upstream 128927 14693632 ~ 14693957 (-) True G114636
TU154667 lncRNA upstream 186540 14751245 ~ 14751528 (-) True G114661
XM_039814714.1 mRNA downstream 7838 14551037 ~ 14553669 (-) True LOC120567737
XM_039815775.1 mRNA downstream 24042 14461472 ~ 14537465 (-) True LOC120568348
XM_039816666.1 mRNA downstream 125301 14430089 ~ 14436206 (-) True LOC120568914
XM_039816665.1 mRNA downstream 125319 14430089 ~ 14436188 (-) False LOC120568914
XM_039814541.1 mRNA downstream 132234 14422482 ~ 14429273 (-) True LOC120567626
XM_039816099.1 mRNA upstream 61462 14626167 ~ 14651376 (-) True scp2a
XM_039815681.1 mRNA upstream 88703 14653408 ~ 14658272 (-) True czib
XM_039815680.1 mRNA upstream 94167 14658872 ~ 14667205 (-) True uck2b
XM_039815679.1 mRNA upstream 109712 14674417 ~ 14677944 (-) True zte38
XM_039817011.1 mRNA upstream 114702 14679407 ~ 14683559 (-) True prdx1
TU153973 other downstream 1472944 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 1792882 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 1958598 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 2343240 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 3672555 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 48908 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 231213 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 725481 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 725481 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 846457 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile