RNA id: XM_039814851.1


Basic Information

Item Value
RNA id XM_039814851.1
length 4933
RNA type mRNA
GC content 0.43
exon number 8
gene id bpnt2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9523170 ~ 9534035 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTCCGATGGGTATCCGGCTGTCACCCCTCGGTGTGGCGGTGTTCTGCCTTCTTGGAGTCGGTGTCATCTACCACCTGTATGCAGGGGTCATCTCCAGCCGCCTGGCTGCTTTCAGAACGAGGGGAAAAGTGGATCTGAAGGACCTGCTGGCTGTCTCAGTAGAGGCTGCAGTGCTCGGTGGCACAGAGGTGAAGAAGGTGCGTGAAGAAAATGACCTGAAGGAGAAGTCCAAAGGCAAGACAAAGGAGGGAGCCAATGAGCTTCTGACTATGGGTGACCTGCAGTCACACAGAAAGATGTTTAACCTTATAAGCAATACCTTCCCTGAAGTCACGgtGAACAGTGAGGAACATGACAACACGGTGGATAAGGCTGCAGCCTGGAGTCGGGATATTCCAACCGACATACGAGACAAGATAGAGGGGGGCAAGTACGTTCCTGCTGAGAGCATCACTGTGTGGATCGATCCTCTAGATGCTACACAGGAATATACAGaGAATCTGGTGAAGTATGTGACCACAATGGTATGTGTGGCTGTAGATGGTAAACCAGTCATTGGGGTCATACACCAGCCATTCACTGGGTTCACTGCCTGGGCGTTTGTAGGTCAGGGGTCAAATATGCGTCCCCGGCCGTCCTACACTGTCAGCCCTCCAAAGGCGATTGTATCACGTTCCCACTCGGGAGCAGTTAAAAGTTATGTTCAGGAGGCTTTTGGAAACAGCACAACAATCATAGAAGCAGGTGGAGCAGgataTAAGGTACTGTCACTTTTGGAGATGCCTTCAAGTGAAACAGGTTCTATGGACAAGGCAGACGTTTACATCCACGTCACCTTTATCAAGAAATGGGACATCTGCGCTGGTGCAGCACTACTGAAAGCACTGGGAGGCCACATGACAACGCTGAAAGGAGAGGACATCGACTACAGTGGAACCCCAGTCAACAAAGGAGGACTGGTGGCCAGTGTTGGTGTGGACCATAAGGCCTTACTGGAGAGACTACCAAACTGGGACCCTGAAAAGCACtgatagacacaaacacagagccaTTGGTAGTTTGGTCAGGTTTTGGTATGGGCAACATGTGGCTGCCCTTTCCTATCCCTAAAAGTGGTCTGCAAACGTAACCAGGCCCGTGTGATTTCATCATCGATCGGAGTCAAGTGTCACCGGCATGGGCCTCCGAGCAGGACGGTAAAACCAACATGGCTGCCACTGGAAACCGCAATGGCTGACACAATGGCTCTGAACACACACTCttgtacatgcatacatactttCAGCTAGTAGAAACGGTACACCTTCTTTtccacatgcatatacacaccaACACATGCTCACAGTGAACACTGGACATCAGAGTCCCTTCACCTACAGAGGACAACTCTCTAATGACTCTTAATGTGAGACATTTAACTAAGGAGCACAATGCTGAACGTTACAACAGAACCTATGGATTGACTGACACAATGGTCTTTTATCATATTAAGTCCCAACTTCAAACCTGGCCTAAACAACCAATGAAGTTACATTTTATCAACAAACTGTCTGTTCACCAGCATCATTATACCAAATTAATTCACTTCACACTATCTAAGTGGTGTCAGCTCAGCTAGAAGACACTGCTAATCCTAAATTTTGGCAAGGCCGAGACAGGATCAGATTTGACCAATTTTGCTTAACTAAGttggagacaaaaaaacaacagaaagggGACATTTGGAAGGAAAAGTTGTCTATTTCCTCATCTTTTGTTTGAGAAAGATTTTTGGATGATAAAATCTATTCTCAGGTTTGGGTGTGAGCATGCTGTGATTAGTGTTCTTTTGCTCTCCTgttatgcacacacaaacattgtaCAGTATGATAACggcaaggtgtgtgtgtctaccaACAGAAGCTACCTCGTCTACCAAGACCAATGGTAGCAACGTTTCAGTGGCAGTGAGAGCAAGGGCACTGATGGAAAAGGGTTTAATGAACCTTAACCCTAAGCAGAATAACTTAAAACATCTGTGGGGGTCTTCACCTTCCTCAGCATCCTAAAAATACGAAATCACGGTTTCTTCACACACCATCACATCTCCAGTACAAACAGTGTGAGTTGGACTGTTGCAGTTCTCAGTGAATTGAGAGCAGAGGATCGGCTAATGGACTAAAGACCGGATGGCAGTGTGGTCGCCTGTGCTTAGAACAATGTACAAAAACAAGTACCATCCAATATGTACAGTCTTATTCAGGACTGCCACATGGGCAATACAGAAGAATTGCATTTGTGTTTCAGTGGTGTTGTATCACCAAGAACTAAAtggaagtttaaaaaaacaagtctAACTGGAGCTGGATCTGTAAATTTTCTCCTCCAATTTCCTTGCAAACCATTCCTGCTACTAAGTGCATGGTTTTGTATTTTGATTAACCTTCACCCTAACACTTTCACCCTACTGAAAATGTATTGTGCTCGATCAACTCCTATTCATGCGGACTACTGTATGTATGGCTGAACTGTCTGCCATTAAGTGTTGCAGTCTGTTTTAACTGACAGTCcagcagccagtgtgtgtgatGGGTGTTCGCCAACAAACACTGGCATGAAGTTGGACTTGTCTTTTTGCTGTGAAACCTTGTTACATGGTGAAAAACAACCATCCGCAAAAAAAGTGACCTGTTTAACGTTCAGTTTGTCTCAGCAGCCTTTGTGTAATTGATAACCTTGTATAGATACAACACGTGTATAGAGGTTAAGAGTTAAATATTCATTCAACGTGTTTTGCCACAGACTGAAGAGAAAAAGATGCTGATGACTAGGAGAAGCTGTTACATTTAAAGGGGTGCGGCTCGGCTCAGAGAGAACAACTTTCTGTCTCAAAGCCAAAGCTGTAGGAGGTTGGGCCTTCATGTGCTACATTTCAGTTTTAGGGTTTGAACGCCTTTGATCGGCACAAGACAACATTGTCCTAGGAGGACAGTGTAAGCCGCAGCAATCGGCATGATTTATGTAGCTGTTGCTATGGTAATGATGGTTAATATGCAAGGCTAATGCTCCAATAGCAATTTAAATGGCATTACAGTGACATGGAAATCAAATGGTTGCTATTGTTTTGTTGGGATGGACATATGAATGCTGTACATTGTTTTACTCCTGGATTCAGGTCCTTGTGTACTGTGAGAAATACTGTAGTTCAGTGAGTATCCGAGATAATgattaaaggggaactccaccAATTTTACATAATATGGAGTAATAGTGTGTTTACAGGTGTTGGAGAGTACGACTGACTATATGGAAAACAAGTTGAATAAAGCCTTTTGTAGCTCCAGATGGAGCTGTGTGAAATCTGATATATTGCCTCAAGTGATTCACTTAAGTCGCTCTCAGTTGGGTCTGAAGactacaaattaaaaaaaagaaagatatctgtgggtgtggagttagaaagaagtgaggtCACCAGCCTAATTTCTGCTGGAGGCTagaggctacattagctgctactagcataacacacccAAATCTACGAATTGTTTTTGGTccagttgcattgtgggtaaagTTGGCAccaggaagaagaagaatgcaTTGAATAAAATCTCAGGTTCTGCTTCATCGATTAATGGGAGTACTCTTTTAATGCATATATGTGTATCTACGAGGCAAAGATGGGGAGGCACAGCCTCAGATTATGGTCAGATTGGACAAAGGGCGCCACGTGTTCTGCCCGACACACCTGAAAACTGCCTCAAGCTTTTAGCAACACAATGGAGCCAACATGGCTGCCACTGTAAATTACCAGCTCATGTCAGCTAGAGAGATTATTGTGTTTCTTGGTAAGTTTCTATACGGCGACAACAAAAACCAAACCGATTATTATCACCACATTGAGAGTGTGAATTGTAGTGATTGcgaccattttatttattttctgagctcactaaaTGGCACTCaatctttggtttaaagaaaaagactcAAGGAATGGTATTTgagtgtgctttcaaccctttgttgaacagagcaTGCTATCTACGTAGTGGGCTTAGAAAATAAGAAGATGGTTCACggagcttcatttggccatcaccaGTGAATTGTTAAGTGACCTGACAGAGTCTTCCCATATCTACTTCTACCTGCTGTGTGAATTGCTGGAAATCCTGTTGATTCCTTAAGTAGCGCACGACTTTGTCAGCAGttgaaaaacatgtttataatGTCCACAAAGCTTGCATGCTTTTGAAATTTAAAATACCTGAAGGCGATATTGCCCATTCTCTACACATACTAACtttttaattgttgttttttcccccatggTTATGGTATTTGGTACTTATTAAAAATTGCCCCTTGTAGAGACCTCATTAGATCCTGTCCCTTCCTCTCAAGCAAGAGTAATCTTAATTTATTTCAGCCCAGggatttcatttttattctgaTAGTTCAAAATATTTGACTTAAATAAGGAGTGACAAAAGAAAATGAGGTAGAAGTTCGGTAGCCACTTCAGTAAAGTTTTCAATGCTGTATCAACAATGTCAATGTCTGTTGAACTGTGTACTACAGGCATGGCTAAAACCAGTTGTGTGGTTTAACTGACCACTCTATCTGCCTCTAACCACAGACACATGCAAAGTATATAAAACATTCCCTTCAGTTTGGAAGTGAACACTTCACCCTGACTTCTCATGTTCTCACAGATAATCATGTTGCATAGAGAGGTGGTAGATGACAACGTGAGAACTAATCCATATGCTATAGGCTATCCTGCCATGTACCATGCTGTTATATGGCTGTTTTGTGTGGAGTGAGGCAGTAAGCTGTCAGTTGGTGTAATAACCAGGTTGTTGAGCATCTGCTCTGTGAGTGTCTCTCatccttttttttctgctgtgaaTTTCCAATAAAACCTCAGTGTGCATGATGGAA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process

KEGG:

id description
K15759 IMPAD1, IMPA3; Golgi-resident PAP phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152752 lncRNA upstream 53073 9469492 ~ 9470097 (+) True G113306
XR_005640716.1 lncRNA upstream 53850 9467298 ~ 9469320 (+) True LOC120568401
TU152730 lncRNA upstream 148065 9374449 ~ 9375105 (+) True G113290
TU152680 lncRNA upstream 253623 9269347 ~ 9269547 (+) True G113274
TU152679 lncRNA upstream 265587 9257323 ~ 9257583 (+) True G113273
TU152798 lncRNA downstream 139670 9673705 ~ 9683738 (+) True G113337
TU152800 lncRNA downstream 139670 9673705 ~ 9681628 (+) False G113337
TU152803 lncRNA downstream 156453 9690488 ~ 9702650 (+) True G113338
TU152934 lncRNA downstream 277945 9811980 ~ 9814242 (+) True G113429
TU152954 lncRNA downstream 308666 9842701 ~ 9843483 (+) True G113446
XM_039816672.1 mRNA upstream 1328 9511182 ~ 9521842 (+) True dars2
XM_039815909.1 mRNA upstream 96623 9359620 ~ 9426547 (+) True LOC120568395
XM_039816590.1 mRNA upstream 183552 9287153 ~ 9339618 (+) True tox
XM_039816878.1 mRNA upstream 266477 9235285 ~ 9256693 (+) False ca8
XM_039816877.1 mRNA upstream 266477 9235286 ~ 9256693 (+) True ca8
XM_039814853.1 mRNA downstream 8607 9542642 ~ 9551821 (+) False trnau1apb
XM_039814852.1 mRNA downstream 8609 9542644 ~ 9551821 (+) True trnau1apb
XM_039814848.1 mRNA downstream 32705 9566740 ~ 9581212 (+) True LOC120567806
XM_039814849.1 mRNA downstream 32720 9566755 ~ 9581212 (+) False LOC120567806
XM_039814850.1 mRNA downstream 33145 9567180 ~ 9581212 (+) False LOC120567806
TU152519 other upstream 520602 9001890 ~ 9002568 (+) True G113130
TU152498 other upstream 621563 8895927 ~ 8901607 (+) False pdca
unassigned_transcript_548 other upstream 629114 8893982 ~ 8894056 (+) True trnan-guu_7
unassigned_transcript_546 other upstream 632811 8890286 ~ 8890359 (+) True trnan-guu_5
unassigned_transcript_545 other upstream 640383 8882714 ~ 8882787 (+) True trnan-guu_4
unassigned_transcript_550 other downstream 4045 9538080 ~ 9538151 (+) True trnaq-cug_7
unassigned_transcript_551 other downstream 4641 9538676 ~ 9538747 (+) True trnaq-cug_8
unassigned_transcript_552 other downstream 5096 9539131 ~ 9539202 (+) True trnaq-cug_9
unassigned_transcript_553 other downstream 5845 9539880 ~ 9539951 (+) True trnaq-cug_10
unassigned_transcript_554 other downstream 7106 9541141 ~ 9541212 (+) True trnaq-cug_11

Expression Profile