RNA id: XM_039814865.1


Basic Information

Item Value
RNA id XM_039814865.1
length 1358
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC120567815
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27261660 ~ 27281330 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACTTTTTCCCTTATAACAGACTCAGGCGTTCGTCTCAAACGTCAAAGCCTCAGAGAGGAACGTATTGATCTGGTTGTGTATTTTTAATCCTGCTGGATCGTTTCACTGTAATTTCATCCGCTTCTGCTCTCATGTTGGAATTATGACTCTGAACACAGACGAGACCCTGAGCACCGAGGGAAGTGCTGCTGATGACTTCCTGGACTCCCTGCTGGGTGGAAGCGTTTCCTCCTCGGCTCCAGCGTCCCCCCTGTGGTCACCCTGCACCActgacagcggcatcaacgagGACACCCTGACAGATCCCAAAGACAGCTTTCACCCGCCCTTCTGCACAGCCTTTCCAGCCTTTGATACGCAGTCTTTCCCTCAGCCTCCAGCTCCAGAGTACAAGCCACCACCAAATGTAAAGACGTCTGACGTTTCCATTGATCTAGGCTGGGAGTCCGATGACCTCCAGGAGCAGTTGGGCATTGCACACTACCTCACTACGAGCCAAACCTCCCCTCTGTCGTCCAGTCAGGCTCTCACGGTGAAAGACCTGCTGCTTTCCAGTCCGGGACAGACAGCGCAGCGATTCCCCCAGCATTCCTTGCAAGAGCTTGTTCTTAATGAGGATGAGAAGAAGCTTCTGGCTAAAGAAGGGGTGAACTTACCCAGCAAACTGCCCCTGTCCAagTTTGAAGAGAGGGTTCTGAAGAAGATCCAGCGGAAAATCCGCAACAAGCGCTCAGCTCAAGAAAGtcggaagaagaagagggaatATGTTGAAAATCTGGAGGGAAGGGTGTCTGCATGCCGTGCTCACAACCTCAAGCTGCAGGGAAGGGTCCAGCAGTTGGAGGAGACCAACAATGATCTGCTGGAGCAGCTAAGCCGGCTACAGGCTCTCCTTCCTAACAGCTCCAGCAAAACAGCACAGAGAGGGACCTGCATCCTGGTTTTGCTGCTCTCCTTCTCCCTGCTCATATCCTCAAATCTTCAGCCAGACCCCTACAGCCAACCCAGCCAGGAAGAGTACACCCAGACCAAAGTGCCGTCCCGCACCCTGCAGTCGATGGATGAAGGGCGAGACgtcgctcctcttcctctcttctccgtATCCAGGGGCTTTGAGGCCCTGTGCAAGCTGATGGGCGGATCTCCCTGCGGTAGATTTCCAATCGTCTCACCACCACAAGCACCGGGACAATCACTGATCTCCTCGGGACCCCCAGGAGGAAAGACGTAGTTAAAGAAAAGCAGACTTGCTTGCAGGCGCGGCATCTAAATGAGCAGTTTGATTGCGTTTCAGCATCTATTTCTTACTGCAGAGACTGAGTGAggtgttatgttgtgtttgccatcagctcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159464 lncRNA upstream 10857 27258374 ~ 27261355 (+) True G118306
TU159428 lncRNA upstream 16863 27252543 ~ 27255349 (+) False G118280
TU159429 lncRNA upstream 17299 27252543 ~ 27254913 (+) True G118280
TU159460 lncRNA upstream 27257 27244749 ~ 27244955 (+) True G118303
TU159432 lncRNA upstream 73753 27198183 ~ 27198459 (+) True G118283
TU159593 lncRNA downstream 82248 27363578 ~ 27366561 (+) True G118409
TU159604 lncRNA downstream 105566 27386896 ~ 27387956 (+) True G118420
TU159611 lncRNA downstream 117724 27399054 ~ 27399396 (+) False gpr35b
TU159690 lncRNA downstream 328768 27610098 ~ 27610325 (+) True G118488
TU159727 lncRNA downstream 407682 27689012 ~ 27690687 (+) True G118514
XM_039814772.1 mRNA upstream 20941 27246293 ~ 27251271 (+) True LOC120567763
XM_039816588.1 mRNA upstream 76006 27191141 ~ 27196206 (+) True LOC120568858
XM_039816675.1 mRNA upstream 81982 27183776 ~ 27190230 (+) True mbd3a
XM_039816677.1 mRNA upstream 81982 27183777 ~ 27190230 (+) False mbd3a
XM_039816830.1 mRNA upstream 89492 27179099 ~ 27182720 (+) True LOC120569025
XM_039814722.1 mRNA downstream 5590 27286920 ~ 27291535 (+) True LOC120567742
XM_039815152.1 mRNA downstream 36999 27318329 ~ 27328851 (+) True cactin
XM_039815328.1 mRNA downstream 113193 27394523 ~ 27399060 (+) True gpr35b
XM_039815340.1 mRNA downstream 152783 27434113 ~ 27442129 (+) True abhd17aa
XM_039816560.1 mRNA downstream 320670 27602000 ~ 27609692 (+) True LOC120568838
TU159378 other upstream 386182 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 502301 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 672140 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 854204 26416508 ~ 26418008 (+) True ccl20a.3
TU159071 other upstream 870134 26399420 ~ 26402078 (+) False G118011
TU159680 other downstream 320694 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 875643 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2687083 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3288065 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3889887 31171217 ~ 31196233 (+) True G119114

Expression Profile