RNA id: XM_039814875.1


Basic Information

Item Value
RNA id XM_039814875.1
length 3815
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120567818
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23899208 ~ 23905529 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTGCGAAAGAATGCCCGCCACAATTTCTCAGAGCCCGAGATGATGTCTTTGAACTTTGTGTTTTATTCAAGCAGCAGTTCAGaccaaataaaaagaaaagctgCAGCATCACATTTTAGAATTAATCTATTCATTGTTTTAGCTCTCatcattgtattttttatgATGTGAAACATTTCTCAGTATTACTCACGttacaaatacaaatgaaaTCTTTTGTTGCAGTTTGAAGTGATTATGCACACCTGtatttttaaaaaagtatataaaATGAAGACTTGCTGGGCGAGTTCCTCTGCCTTGATTTGAATCAGCTATAACACACGTCTGAAAACATACACATGATGTGGGGCATGACTCAGGAAGTGGTGATGAAACAAAGGCAGAGAAAGCAGAAGTGTGTCTGGCACAACTCagacagtcagtcagacaggcacACTCAACGTTTGATAAGAGACTGCTATCCGTGAGCAGCGGCAGCGACACCATGACAAACTGTTCGCTTGACGTGGTGGACAACCTGATGAGATATTTGGAGCTGGCCATATACCTGCCCATCTTCCTCATTGGTCTGATTCTCAATGTTGCAGCGCTCTTAGTGTTCTGCTTCTTTCTGCGGAAATGGACAGAGTCAACTATCTACATGACTAGCTTGGCTTTGATGGacctgctcctcctcttccctcttccCTTCAAAATGCACGCCAGCTATCACAGCTGGCCTGCTAACCTCCAACCTCTGTGTTCGGTCTTGGAAAGCCTGTATTTTGTTGGGATATATGGCAGCATCTACACCATCATGTGTATAGCTGTGGACCGATGGGTGGCTATCTGTCACCCGTTCAAAGCCAAACAACTGCGTTCACCCAAAGCGGCTCTGGGGACATGCACGGGGGTCTGGGTGCTGGTGCTGGCAGCGATCTTTCCAACCATCTATCGCTTCAGAGAGGCCGGGCAGGGGGACTTCCGCTGTTTCCACCAGTTTTCAGAGAAAGGCTGGAGCCCTCCGGTGATCATCTGTCTGCAGGTGTTTGGGTTCCTGGCGCCTGCACTGGTGGTGGTTTACTGTTCGGTGCAGACCATCTGGGTGCTTCAGCAGTCCGGCCAGCACAGCCCCCAGAGCCGGGCCTGTGTGAAGATCATCTACAGCAGTCTGAGTGCCTTCCTGCTGCCTTTCACTCCCAGCCACCTGGGCATCCTCCTGCAGTTCCTGGTACACCAAGGAATGATTCAAGACTGCGGCAACAAGACCAGGATTAGCCTGTTTATACAGATAGCTATGTGTCTGTCCAACATCACCTGCTGTCTGGACGCTCTGTGCTACTACTTCATCGCTCGTGAGGTGAGGAGCACCAAACACACCTTCAGGATATCAATGATCAGCCAAAGAAGAGCCACCTTCAGCACTTCTGAACACAAAGACAATACAAGGTAAAACATATATCTGTCCTCATTGGATGCCTGGTGGTGAATACGAGATCTGACATCTTGAGTTTTAGCAGGACAGTGAAACTGAAAAAGAGCCAGTATTGTTTCCAGTAGCTGATAAGCAAGTGTAACATGTACTAAGAGTAACAGGTCAGAGTGCAAGCTCAACTAACCACAGAGCTTGAGAGTAAGGTTTAGAAGGGAAAGGATCTGACAATCTCTGGTACATGATTTGGTCCAGTGACAGGAAGCACCGTAGACGCCTGTGTAACCTCAGAGAGCTCCGATACCCAAAATGTAGGCTGCAAAACGAAAATCCACCAAACAAGCCACAATGTGACTTCTTCCTGTAATGATTTATGGATGAGCTTGCGAGATGGCTTAAGGCACTTTCAGGTCATCTGGTCCTGCACACTGAGAACCTGATGTGGGGTACGATTCATTTCAAAGCAGTGGAACCGGGAACCAGCAGCTCATTGCAGAGCTTTGTAGTCTTCTGTATATGCTCAAGAAGTCAAGTCAAAGGCGCTCTAACTGTTCTGAAGACCAAGCATTTAAGATCAGGGCTGATACACTTCACCACAATTTGATTCAAAAGATACAGTTAGTGGGCAATCTCTAGTTCACCCGGTAAGaggtgcgccccatgtaggctgagtccttggcagcggcccgggttcaaatccaacctgcggcccttttctgcgtgtcatcccctctctttctctccccctttcctgtctatctactgtcactatcaaataaagggaaaagtccccaaaaaataatcttaaaaaaataaaaaaaagatacagtCAGTAAATTGTGAAACTTCTTATAAGACACAGCTAATTATGATAAtcagtttttatttatgttgcATATATAAAATGCAGAGTTacataaaaagtaaataattaACAAAAATGAAACCCACGTATTAAAGTATTCACTTACTTAGTATATGAATAAATCAAGACACCAACCAGTTGAGATCTGAAAACACATGAAGCAATTTAATTgacaattatttataataactATAGCTTAATGACAACAGATTTTTTTATAAACTTGAACTGATACTTAAATAATTTTATTGCTTTctaattgttgatttttttttagtttggttCTTTGGCAGATTGTGACTTGTTAAGAAATATTACTGACTTGTAATACATATAACTACATCTATCATCATTAATAAGAAACTGGAAATATAGCATCAGAAATATATTTGAACCCATACATTCTGGGAATTCTGACAttatattacatacattacattcatGTATCCATCCTGtaaattattatataaataatgcCTGAGGCTGAGTGACAAATAGATTTTAAATGTATCTCTGACCTTATTAATGCATACTCAAATTATGTTCAAGGGGGATAATACTAACACATTTCCTATAATTGTCCTGATACGAATGAGGAAGCAAATAAGGCGAAAAGTCTGCTGAACGTTTCAGGAATGCAAATTGACTGACTGTGTTTATCAACTTCCTTCGACTTACCACAATGTGTGTATGACATGCTATTATTCATGACACATGTAAACTATAAGTTTAtatttgaattgttttatttaattctttACAATGTAGCTTCAAATGTGCAATAGTATTAAAATTGTTAAAAGCCAACTGTTAATGGCCTCACCTGTGTAGTAAGATCATAAGACTGTTTTGATATTAGTATGTTTACAGGAGGACATTTGATTTATGTGAATGTAGTCAAAGCTAAACTCAAATAGAAAGTTGCATGTGCAGTACATTTGGCCGCTCTCTGTCTTATTTTGCTCATGTTGAACAAAGTCACCTTTTGGTAACAGTTGAAGGGGTTCTTACGCCCGATTAGGGGATTTACTATATTAATGCAATTTTTATTGTATCAAATAATCTCTTCCAAAACCAGAAACAAGACATGAAACTCATGTTTTGTTTACTTGCATTAATTGTGTCTCGATACTTTCATTTTGCACAAGCCTCATCTTTGCTGAGTTTCAGTGTTATTTGTTTGTGATAATTcagttttgtttctgttttaatttctgtttctgttatttttccTTAAGTAAAATTTATCGTGGAGATTCTTGATCTGGCTCAGACATCATGATGTAAAGATTTTCAATTAATATTTATCAGAGCAAAGCCCTTAACAGGTAGATAATGTTgatgtttgtatgtttatacCATATGCTTTACTTCTATGGCTGTTTGTTCTGAAACTTAAAGCTCAAATTTACATTATGACAACACGTGTGTCAGTTTGGCCGTTGAAGAAAATGACAGAAATTACTTTACTCAACAATTTGTATGACATGAAACCATATATTCTTCTTCCATTTTAAAGTGAAATAAAGCTTAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08413 GPR55; G protein-coupled receptor 55

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158161 lncRNA upstream 296 23898650 ~ 23898912 (+) True G117346
TU158159 lncRNA upstream 1562 23897243 ~ 23897646 (+) True G117344
TU158131 lncRNA upstream 42677 23856129 ~ 23856531 (+) True G117320
TU158126 lncRNA upstream 50262 23848687 ~ 23848946 (+) True G117315
TU158087 lncRNA upstream 153231 23742484 ~ 23745977 (+) True G117297
TU158170 lncRNA downstream 4993 23910522 ~ 23915931 (+) True G117355
TU158175 lncRNA downstream 11229 23916758 ~ 23920029 (+) True G117359
TU158177 lncRNA downstream 11229 23916758 ~ 23919254 (+) False G117359
TU158185 lncRNA downstream 24319 23929848 ~ 23933807 (+) True G117364
TU158203 lncRNA downstream 42397 23947926 ~ 23948202 (+) True G117374
XM_039815581.1 mRNA upstream 2297 23891144 ~ 23896911 (+) True snorc
XM_039815575.1 mRNA upstream 8240 23871206 ~ 23890968 (+) False gigyf2
XM_039814878.1 mRNA downstream 7242 23912771 ~ 23914295 (+) False hes6
XM_039815142.1 mRNA downstream 58420 23963949 ~ 24005011 (+) True clcn2a
XM_039815140.1 mRNA downstream 62639 23968168 ~ 24005011 (+) False clcn2a
XM_039815138.1 mRNA downstream 62640 23968169 ~ 24005011 (+) False clcn2a
XM_039815139.1 mRNA downstream 62640 23968169 ~ 24005011 (+) False clcn2a
unassigned_transcript_561 other upstream 30883 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158130 other upstream 44051 23850879 ~ 23855157 (+) True G117319
TU158062 other upstream 213404 23677079 ~ 23685804 (+) True LOC120567964
XR_005640697.1 other upstream 1220477 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 1286799 22608064 ~ 22612409 (+) False LOC120567968
TU158168 other downstream 341 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 7135 23912664 ~ 23914498 (+) True hes6
TU158239 other downstream 116912 24022441 ~ 24023659 (+) True G117400
XR_005640839.1 other downstream 144235 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other downstream 144235 24049764 ~ 24054704 (+) False LOC120569114

Expression Profile