RNA id: XM_039814884.1


Basic Information

Item Value
RNA id XM_039814884.1
length 6444
RNA type mRNA
GC content 0.46
exon number 33
gene id rock1
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20741261 ~ 20779745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGAAGTTGCTTCTCCGGGGTGTTTGAACAGGAAGGCGGACATGTTGGTCAGGCTGTGGGAGAAAATCGGGCATCGTCTGCTGTTTTTTTCCGAGAACTAACACACTTTTAAATCCGATTTATATGCCTTCGATCTGAGAGATAAAGCAGTGTGGACGGGAAATAGTCGACAATCAATGACAACGCACGGGATGCAGCGGAAGGACCGCCGTTAAACGTTGTAACGACTCCGTGTTTAAACTGATCAAAATTTGGAAGAAgcagaagtttttttttcccaccactTCTACTTTTGAGCTGTCAGAATCTATTGTCGTTTTCTGCAAGGGCCTGGCACAGTATGGCAACGGACATGGACTAACGTTTCCACGAACTGTGCTTTTCAAATTGACATtacatttaacttttaattgCCATTTGTTCGGATGCACCAACATTTTAAGCTCTTATCCTCAGTGGCATCCTGCGGAGGCTGACTAATCTGTCGCCGCATTTATCTTTTGCCACTGAAGTTGTTTGCCACTCATACTGGGAAAACATCTTTCGACTCTGAAAATGTGGCTTTTGTACATTCAACGCAATCTTAAACGTTTCATCGTATGTGAAAGCTCGAGGAGAACGATGTATTTTCTTTGAAGTGCTGCGGCGTAAAGTTCACACGAAGAAAGGAACatttggctagctagctaccgctggCTGCtaaagctagctagccagcctcCTGCCTCGCCAGTGAGCTGTTTTTGTTCACAACCCAACATCGGGGCTGAGTTTAACAGAAAAAATGTCTGCTGGGGAAAGTGTGGCGGCTCGATTTGACAAAATCGATGCCATGTTGAAGGACCCAAAGTCAGAAATAAACACGGATTGTCTCCTGGATGGCTTGGACGCACTGGTGTATGACCTGGACTTCCCTGCCCTGAGGAAAAACAAGAGCATTGACAACTTTTTGAGTAGATACAAGGAAACCATTAGTAAAATTCGGGATCTACGCATGAAAGCGGTGGACTATGAGGTGGTTAAAGTTATTGGGAGGGGGGCATTTGGAGAGGTGCAATTGgtAAGACACAAAGCCACAAGCAAAGTATACGCCATGAAGCTGCTAAGCAAGTTTGAGATGATCAAGAGGTCGGACTCTGCTTTCTTTTGGGAGGAGAGGGACATCATGGCGTTTGCCAACAGCTCATGGGTGGTGCAGCTCTTTTTTGCATTCCAAGATGACCGCTACCTCTACATGGTGATGGAATACATGCCGGGTGGCGACTTGGTAAACTTGATGAGCAACTATGACGTCCCTGAGAAGTGGGCCCGCTTTTACACAGCTGAAGTGGTGCTGGCGTTGGACGGAATCCACTCCATGGGCTTCATTCACCGGGACGTGAAGCCTGATAACATGTTGCTAGACAAAGCAGGCCACTTAAAACTGGCAGACTTTGGGACCTGCATGAAAATGAACAAGGATGGTATGGTACGATGCGACACAGCAGTGGGAACTCCAGACTACATTTCGCCTGAGGTACTGAAATCTCAAGGAGGAGATGGCTATTATGGCAGAGAGTGTGACTGGTGGTCAGTGGGAGTGTTCCTGTACGAAATGCTAGTCGGCGACACTCCTTTCTATGCCGACTCCCTGGTGGGGACCTACAGCAAAATTATGAACCACAAGAATGCCCTGACCTTCCCTGACGACAGTGACATCTCCAATGACGCCAAGAATCTCATTTGTGCTTTCCTGACTGACAGGGAAGTTCGACTTGGCCGTAATGGTGTCGATGAGATCAAGAGGCATCCTTTCTTCAAGAATGACCAGTGGACATGGGAGAACATCAGAGAGActgctgccCCAGTAGTGCCTGAACTAAGCAGTGACGTTGACACCAGTAACTTTGATGACATTGAAGAGGAtcggggagaggaggagacctTCCCCGTACCAAAGGCCTTTGTTGGCAACCAGCTCCCCTTCGTAGGCTTCACTTATTACAGCAGTCAGCACCTTATGCGCAGCTCCACCGCCATAAAGACCTGCGACAAACGTAGCAGCTCCACAAAAGAAGACAAGAGTCATctggAGAACCTGCAGAAGAGGATCTACCAGCTGGAGGAGCAGCTCCATAGTGAGATGCAGCTTAAGGATGAGTTGGAGCAGAAATGCAGGACATCAAACACCAAGATCGACAAGATCATGAAAGAACTGGATGAAGAGGCAAACCTGAGGAAGAGTGCAGAGGCCAGCACATCTCTGCTGGAGAAGGACAAGATGATGCTACAGCACAGATTCACAGAGTACCAAAGAAAAGCTGACCAGGATGCAGAGAAGAGACGCAATTTGGAGAATGAGGtgTCGACTTTAAAAGAGCAGCTTGAAGATTTGCGGAAGATTAGCCAGAACTCTCAGGCCTCAAATGATAAGATTGTCCAGCTGCAGAAACAGATGGAAGAGGCCAATGACCTCCTGCGTGCAGAGTCGGACACAGCAGCGAGACTGAGGAAGAGCCACACAGAGATGGCCAAGTCAATGAGCCAGTTGGAGAGCTTGAACCGCGAGCTGCAGGAGAGGAGCCGTGCAGCGGACGAGGAGAAGGCCCAGCTGGAGAAGGAGCTCCTGCTTCTTCAGAGCAGCCTGGACTCCGAGAGGAGGAACTACAGCCTGGGCTCCGAGGAGATCATGGAGCTGCAAGCGAGGATGGCAGGCCTGCAAGAGGACAACAAAAACTTGAAGCACAGCCTCTCCAAAGTGGAGGCGGAACGCAAACAGGCCCAGGAGAGGAGCAATAACCTGGAGAAGGAAAAGAACAACCTGGAGATAGACCTGAACTACAAACTGAAGACCTTGCAGCAGCGTCTGGAGCAGGAACAGACTGAGCACAGGGGGACGCGGGCACAGCTCACTGACAAATATGAGTCTATTGAAGAAGCCAAATCAGCTGCCATGAATGCTGTTCAGCAGAAGATGTCGGAGGAGAACGGCGCGAGGATGCGAGCGGAGAGCCGGGTAGTGGAGGTTGAGAAGCAGTGCTCGATGTTAGAGTTTGACCTCAAGCAGTCGGTGCAGAAGATGGAGCAGCTGATGAAGCAAAAAGAGAGGCTGGAAGATGAGGTGAAGAATCTGCGGATACAGGGAGAACAGGAGTCGAGCAAGCGTGTCCAGTCTCAGAACGACCTGAAGAGCCGCACGCAGGAGGTGGACCGTCTTAGGTGTTCAGAGAAGCAGCTCAAACAGGAGATCAACACAGCACTAGAGAGTAAACGCTCGCTGGAGTTCCAGCTGGCACAGCTGACCAAACAATACAGAGGCAACGAGGGACAGATGAGGGAACTTCAGGACCAGCTTGAGGCCGAACAGTATTTTTCTACGCTTTACAAAACTCAGGTCAAGGAACTAAAAGAGGAGATTGAGGAAAGGAACCGGCAGGTACAAGATGCTCATAAAAAGGTGCAGGAGTTATGCAGTGAAAGGGACTCCCTGTCTGCCCAGCTGGATCTGACAGTGACCAAGGCCGAGTCAGAGCAGCTCGCCCGGGCACTGCAGGAGGAACAGTACTTTGAGCTCAGCCAGGAGAACAAAAAGGCAACAAGTAGACATAAGCAGGACGTTGCGGAGAAGGAGTCTACTATTGCACGGCTCGAGGAATCCAATAGAACTCTGACCAAAGATGTGGAGAACCTCAGTAAAGAGAAGGCTGAGTTAAATGAAAAGCTCAGTACTCAGGAAGAAGAGTATGCAGCTCAGAAGGAAGAGATTGCAAATACAATCAAGGCCAACTACGAGAAGGTCCTTAACACGGAGCGCACGCTGAAGACTCAGGCGGTTAACAAGCTGGCAGAAATCATGAACCGCAAGGACATGAAGCTGGACCAGAAGAAGAAGGGCAGTACTGCCGACCTGcggaagaaggagaaggagaaccgGAAGCTTCAGCTGGAGCTTaaccaggagaaggagaagttcAACCACATGGCCATCAAGTACCAGAAGGAGTTGAGCGAGATGCAGGCGCAACTGGCCGAGGAATGCACATATCGCAACGAGCTGCAAATGCAGCTGGATAGCAAGGAGAGCGACATCGAGCAGCTCCGGGAGAAACTGAACGACCTGCAGCAGCGCATGGATAGCTCTAGTATCACCAGCTTGCAGACAGATGAGACGGACGGCAACATCGCAGAATCCAGATTGGAGGGTTGGCTGTCCATTCCTAACCGTGCAAATATCAAGCGATACGGATGGAAGAAGCAgTATGTGGTGGTGAGCAGCAAGAAGATTCTGTTCTACAATGATGAGCAGGATAAGGAACAATCCAACCCCTCAATGGTACTAGATATCGaCAAACTGTTTCACGTAAGACCAGTCACACAAGGAGATGTGTACCGTGCTGAGACAGAAGAGATTCCAAGGATATTCCAGATTCTGTATGCCAATGAGGGAGAATGCAGGAAGGAGGCGGACATGGAGACGGTCCCTCAGGGCGACAAGACCAACTGTCTCCCACACAAAGGCCACGAGTTCATCCCTACACTATATCACTTCCCTTCCAACTGTGAGGCCTGCTCCAAGCCTCTGTGGCACGTCTTCAAGCCGCCTCCGGCCCTAGAGTGTCGCCGCTGCCACGTCAAGTGCCACAAGGACCACCTCGACAAAAAGGAGGACGTTATTGCACCTTGCAAAGTAAACTACGATGTGACCTCTGCCCGGGACATGCTCCTGCTGGCCCTGACCCAGGATGAGCAGAAGAAATGGATTGGCCACCTTGGAAAGAAGATTCCCAAGACCCCACCATCCACGTTTTCAAGAGCCTCACCTCGGTCTATGTCCACTCGCTCTGGACCAAACCAGTCCTTCCGCAAGAACCCTAAAAGCAATACAGGAAAGCTGAGcTAACCATCTGAACCTCTGGGATTTTTTTCTGGACTCTAAACTTTCCCTCATCCTCAAAAACAAAGAACCCTGTAttgcataaaacaaaaaaagaattcaTTAATCAATAAATATCCAGCGCTGGAAAATTGCAACACATGTCAGACACAAGGCATCATGGACATTAAGAGGCCTGATACCCCCTCCATCACCTTTCCACATTCAAGAGATAACCTTCATTCGACTCAACATACAGCTCTCCATTTCTACCAGAAGATGGCACACTCGTCTTGAACTAAAGATGTGGAGAAGCGGAGTGATTGAGGGACTTATGTCATGGAGACTTTCGGTTTTTCATATTATATGACAGTTGTGATAGAAGTGGGAAGGTTAAAGGGGGTTTTGCTGGGACTTCTGTTGTATGTGTTCAGTTTACGGTACTGTCATACAGGGATTGCAGATCTGCAGTGAGTGGTTGTCTCTAAGGGGTGgaaaattaatattttgtcatttttccccCAGCTGACAGATACTCTAGCTAAATGCAAGCATACTTCTGTTTCCAgctaacaaaagaaaaaagaaaaagactgatGCCTTCATTTAATATCTCTGGCCATTTGCCTTCATTCTTATCACTCTGCAAGTCACTTATCAGGTTTGGGAAAGAGTATTGGGACATAAGTATTAGACGTTTTGAGTATTGAGTGAGGAGCATGCAAGATCATCATTTAAATCTatgcattatttttattataattatttttattgctCCAAGCCATAAGGAATATTCCATTGTAATGGCATATAGGAGTCCTAAAACTTAATTGACTTGTCTTTGTTTATTTGGTACATTGTctctgtaatattttttttcttgtattgtttatttttttttatgtattgccTTACATTGATTCATAGATACATGGTTCAAAAGGAAAACATTAAGTTAACAAATGTAAAACTGCACTGTTTGAATTGTAAATTATTTGTAGACTAAACAGGTGTAGCATTTGGCCCACCTAGTGCCTTAACGTTTGGATATTGATTTTACTGCcatatctgtttttttctttttcttctccaaaACAAGACAAATCTTAACTCTTCCAtcctttattttttaagaaaatcaCCACACTTTTTATCAGAACTTCTTTACTCTGGTTtgagtacataaaaaaaaaatatatatatatatatgttagaTTACCTCTTTATGGACACATTGCAATAGTTAATGTGTCAAAACAAAGTCCCTAGACTCGGTTCATATCATAAGACAAATTTCGGGATGGTGTACCTAAAGTGAACCTACCTATGTAAATGATTGTCCTAGTTAACGATTACAAGTTGTTTCTCTAACAAGGTCATGTCCCGTTAATGCAAACCCCCCACAGTGTATATAATGAAAGAGACCTAAGGATTATGGAATACCTCCGCAATCTTTTTATTTGTAACTTtttgttcagttaaaaaaaagcacTGGAACTATGATCTACTCTTGtcttggataatttgcatggtTAATTGCATTGGAGTCCGCACTGATGGATATGTCAATAAACATATCTTTATCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156980 lncRNA upstream 42052 20696904 ~ 20699209 (+) True G116465
TU156979 lncRNA upstream 44788 20693420 ~ 20696473 (+) True G116464
TU156977 lncRNA upstream 48120 20692887 ~ 20693141 (+) True G116463
TU156975 lncRNA upstream 49276 20691619 ~ 20691985 (+) True G116461
XR_005640642.1 lncRNA upstream 87111 20648605 ~ 20654150 (+) True LOC120567944
TU157029 lncRNA downstream 48131 20827876 ~ 20828235 (+) True G116507
TU157036 lncRNA downstream 100947 20880692 ~ 20880996 (+) True G116514
TU157060 lncRNA downstream 169259 20949004 ~ 21009216 (+) False G116529
TU157061 lncRNA downstream 228295 21008040 ~ 21028982 (+) True G116529
TU157070 lncRNA downstream 241886 21021631 ~ 21030496 (+) True G116538
XM_039815053.1 mRNA upstream 51631 20677357 ~ 20689630 (+) True abhd3
XM_039815168.1 mRNA upstream 217722 20507410 ~ 20523539 (+) True npc1
XM_039816205.1 mRNA upstream 236985 20461791 ~ 20504276 (+) True egfra
XM_039816632.1 mRNA upstream 332228 20407668 ~ 20409033 (+) True c1ql3b
XM_039814895.1 mRNA upstream 345043 20382502 ~ 20396218 (+) True gpt
XM_039814887.1 mRNA downstream 2510 20782255 ~ 20792499 (+) True usp14
XM_039816647.1 mRNA downstream 102872 20882617 ~ 20915322 (+) True LOC120568904
XM_039816649.1 mRNA downstream 119810 20899555 ~ 20915322 (+) False LOC120568904
XM_039816648.1 mRNA downstream 121990 20901735 ~ 20915322 (+) False LOC120568904
XM_039816305.1 mRNA downstream 155690 20935435 ~ 20983609 (+) True pth1r
XR_005640618.1 other upstream 365628 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1224316 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 1722535 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2067199 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 2386917 18305149 ~ 18354344 (+) True G115729
TU157037 other downstream 102961 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 1091208 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1828319 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1861765 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2897334 23677079 ~ 23685804 (+) True LOC120567964

Expression Profile