RNA id: XM_039814890.1


Basic Information

Item Value
RNA id XM_039814890.1
length 2489
RNA type mRNA
GC content 0.45
exon number 14
gene id ssx2ipa
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20366760 ~ 20373145 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATGGTTTGAAGCCAGCGGaggaatatatttaaaaaaaaaacactcaatcAGCAGCAACCGTTCTActcatactgtctatggttctaCTGTCTGTCGGAGCATCACTGCTTTCACATTAAAGTAGAGCTCAATTCCAGTGGGAGCCTCTGATCCACCGCCGAGTGCTAATCCGCCTTCTGTTTGGTAACTCATGACCTCACATCCGAGTGTCCTGATGTGTCGATGATATGGGAGAATGGTGGACAACTGTGCCAGTAGGGACATCTATTGGAAACTATGAGATCTCCAGCATATCACATGTGACAATGTCGCCCTCAAGACAGAACAACCTTGTGTCAATGCAATCTTCTTTGTCCCTGAGGAGCTCCTACAATGGGATTAGTGCCTTTTGCACAGAAGATACTATTCCTCAATGCATTTCATACATCAATCAGGAGCTTGACTCACTGGGCCTTTCCTCCACATGTATTGAGGCCAGCTCACTAGAGGGAGCCGACCTGAAGACAGTGCCAGCTCTGAATGCCATGTATGAGCTAATGCAGATTCACAGACGCAATATGTGCACTTTAGAAGAGCTCGAGAAAGAACAGCTGAAAAAATCCAGCACCTTGGACCACATGCAGATGAACAACTCCAGACTCAAGGATCAGTTGGAACTGTCCATAAGGGAGAAATCGGGTCTAcatgagacagagaggcagtTGCACCTCAAAATTAAGACTTTGCAGAGCtgcttaaaaacagaaaaagatgaGGTTCAGAAGCTCCAGAGTATCATTGCCAGCCGGGCCTCTCAGTACAGCCATGATGccaagagaaaagagagagaagctgCAAAGCTCAAGGAACGCCTCGGCCAGTTACTGGTCGACAGAAGGGATAGAAAACTGGCTATCGACGTACTGAATTGTTTGGGACGTTCAGATGGAAAAAGGAGCCACTGGAAGACTACAAAAGCGGCAGCCAGCCATGAGGGTGAGATGTACACGTCCTTGCTCAAAGACTACGAGGTGAGTCAGAGGTCCTTGATGCTGGAGAACGCTGAGCTTAAGAAAGTCCTCCAACAGATGAAGGAGGAGATGATTCATATCCTGAGTCCACGCCGGCCCACCAGAGGAGCCAATGCTGATGCGAGTCAGGAGCAGGCTGATTCAGATGGGGAGGAGAAGGTGGGTGATTTTAGCAGGGAAACTCTTGACCAATCCTGTGAGCATGCCAGGGAGCAGCTCACCAACAGCATCCGCCAGCAGTGGAGGAAACTGAGGAACCACATGGAGAAGTTAGACAGCCAAGCCTCGCAAGTGCAGAATCAGCTGGAGTCCAATAAAGAGGTGATACCAAGGGAGACCCACGAGGATGAGATGGAGAGGATGAGGAGTGAAGTGCAGCAGTGCAAAGAGTTCATTCATGCCCAGCAACAACTCCTCCAGCAACAACTCAACACATCATTTGATGACGAGACAGCAGCTCTTCTTAATGACTGCTACACGCTCGAGGAGAAGGAGCGTCTCAAAGAGGAATGGAGGCTCTTTGAGGAACAGAAGAGAAACTTTGAGAGGGAAAGAATGAACTTCACAGAGGCTGCTATTCGCCTGGGGCGAGAGAAAAAGGCCTTTGAGGAGGACCGTGCCTCTTGGCTGAAGAATCAGTTTTTAAACATGACTCCCTTTACAGACCATAGGAGATGTTCCTCTTCTGACGGTCAAAGTGCCTTATCAATCAGAAGTGAGCCAGAGATGAGGAGGTCTTCCACGAAAGCCCGGCTGGTCACATCGTCAACCCACGCCACGTTCTCCACTCCTAAACCTACACAAAGTGCTACTGTGCCATCCACAACTGAACTTTATCGGACACTCCGCCTCATACCAGACAGCAGttcctCCAGACATTCAAATCGAGGACGATGGCAGGAGTCCAGCAGCACTGAAGATGGAGATATTCGGGTCAAATCAAGAAACCGAGTTCGATGTGGAGACTTGAGTATCTTCTCTTTTGGTGAAGATGAGAACAGCCTCACTTGAAGAACTTCCAGTGCCTTTTTGATATAATTTTGCAGTTGACTTTAGCATCAATTCATGGCTGAATTCAATTACCGCTGATGAACACTACATTTGCTTTGCAGCATTTTTATGTTGCTTTGTTATGGACATGCACATATCATTCACCAAAGCTGATCAAACAAGAAAGCACTTTAATGATTGTACATTTATTTCCTTACCAAACAAATCAAAACTGACAATTCAGATTTTAAGCTATATTCAAAGGTGTCTACCAAGTAGTGATTTGAACATAGTGAGTAAGAAATCTCTTTTTTACATGTGGGTTATAAGCTGTCTCTGATTATATTCAATGTTTAAGTTTAGAATTAACATGTTTTCATATTCTAGATGTATAAATTATGATTTTTAATGGGAGCATAAATTGACATCAGATTTATAATTATCTGCTATGCTGGTATAACTGCACATTAAAGTTATTTTAACAaag

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156822 lncRNA upstream 44227 20322288 ~ 20322541 (+) True G116327
TU156817 lncRNA upstream 51497 20314888 ~ 20315271 (+) True G116322
XR_005640611.1 lncRNA upstream 163030 20202125 ~ 20203738 (+) True LOC120567788
TU156672 lncRNA upstream 463949 19902243 ~ 19902819 (+) True G116216
TU156671 lncRNA upstream 481069 19884595 ~ 19885699 (+) True G116215
TU156827 lncRNA downstream 109 20373254 ~ 20375598 (+) False LOC120567833
XR_005640642.1 lncRNA downstream 275460 20648605 ~ 20654150 (+) True LOC120567944
TU156975 lncRNA downstream 318474 20691619 ~ 20691985 (+) True G116461
TU156977 lncRNA downstream 319742 20692887 ~ 20693141 (+) True G116463
TU156979 lncRNA downstream 320275 20693420 ~ 20696473 (+) True G116464
XM_039814894.1 mRNA upstream 236 20360283 ~ 20366532 (+) True mcoln3a
XM_039814893.1 mRNA upstream 236 20360283 ~ 20366532 (+) False mcoln3a
XM_039814530.1 mRNA upstream 7668 20357116 ~ 20359100 (+) True bcl10
XM_039816613.1 mRNA upstream 19284 20339503 ~ 20347484 (+) True LOC120568873
XM_039814901.1 mRNA downstream 82 20373227 ~ 20375633 (+) False LOC120567833
XM_039814896.1 mRNA downstream 3830 20376975 ~ 20395723 (+) False gpt
XM_039814899.1 mRNA downstream 3834 20376979 ~ 20395723 (+) False gpt
XM_039814900.1 mRNA downstream 4013 20377158 ~ 20379307 (+) True fuz
XM_039814897.1 mRNA downstream 9134 20382279 ~ 20395723 (+) False gpt
unassigned_transcript_559 other upstream 849823 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 1348042 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 1692706 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 2012424 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 2336873 18027280 ~ 18029895 (+) True LOC120567767
XR_005640618.1 other downstream 90 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 509561 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 1497808 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 2234919 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 2268365 22641510 ~ 22678731 (+) False LOC120568311

Expression Profile