RNA id: XM_039814897.1


Basic Information

Item Value
RNA id XM_039814897.1
length 1703
RNA type mRNA
GC content 0.54
exon number 12
gene id gpt
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20376975 ~ 20396218 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAAAAAAAAGTGAGGTGCAGGGAGCTCAAGACAAAGTTGGAAGCTGCACCCAGTTCGCTGATATCCCTCTAAACCACGTCTGCAGTCCAAAGCTGTTTCAGCTCGGTAACCGGAGAACCGACCCTGATTGACAGCCGTACGAGCTTTATCGAGTCTGAGCGCGACTCGGCGTGGGCTCCCCAAAGAGAAGATGTCCGAGAATGGAGTGCTGTCCCGGGCCAAGGTGTTGACCATCGACACCATGAACCCCACGGTGAAGAAGGTGGAGTACGCCGTGCGCGGGCCCATCGTGCTGCGGGCTGTGGAGCTGGAGAGGGAGCTTTCTGAGGGAATGAAGAAGCCCTTTTCGGAGGTCATCAAGGCCAACATTGGTGACGCTCATGCTATGGGCCAGCAGCCAATCACTTTCTTCCGACAGGTCTTGGCGCTGTGCTCCTACCCCGAACTGCTGAATGACAGCACATTCCCAGAGGATGCTAAAAGTAGAGCACGCCGCATTCTGCAGTCCTGTGGAGGGAACAGTATGGGTTCCTACACGGCCAGTCAGGGCATAGACTCTGTGCGTCAGGATGTGGCCTGCTACATTGAGCGAAGAGATGGCGGTGTGCCCTGCGACCCAGACGACATTTATCTCACCACAGGAGCCAGCGACGGCATTGTGACCATTCTGAAGCTGCTGGTGTGTGGCGAGGGTGCGACCCGTACAGGCGTCATGATCTCCATACCTCAGTATCCCCTGTACTCTGCTGCGTTGGCTGAATTGGGCGCCGTGCAGATCAACTATTACCTTAATGAGGAGAAGTGCTGGAGTATGGACATCAGCGAGCTGCAGCGCGCCCTGGATGAAGCCCGGCGCCACTGCAACCCCCGAGCGCTGTGCGTCATCAACCCTGGAAACCCCACCGGTCAGGTTCAGAGCAGACAGTGCATTGAGGACGTAATCCGATTTGCAGCAAATGAACGTCTCCTCCTCATGGCTGATGAGGTGTACCAGGACAATGTGTATGCTGAAGGTTGCCAGTTCCACTCTTTTAAGAAGGTTCTGTTTGAAATGGGGCCAGAGTACTCTGATACAGTGGAACTGGTATCTTTCCACTCCACCTCCAAATGTTACATGGGAGAgtGTGGCTTCCGTGGAGGCTACATGGAGATCATCAACATGGACGATGAGGTGAAGGCCCAGCTGACCAAGCttgtgtctgtccgtctgtgtcCTCCTGTCCCTGGACAGGCTCTAATGGACCTGGTGGTCAACCCCCCTCAGCCTGGGGAACCCTCGCACGACAACTTTATCAAGGAGCGCACAGTCACCTTAAGTGCCTTAGCAGAGAAGGCCAAGCTCACAGAGCAGGTTCTGAATACTATTCAAGGCATCAGCTGTAATCCTGTTCAGGGCGCTATGTACTCCTTCCCTCGTATAACCATCCCTGAAAAGGCCATCCAAGAGGCCATGGATAAAGGTCAGGAGCCAGATATGTTTTACTGCATGAAGATGCTGGAGGAGACGGGGATCTGCCTCGTACCTGGAAGTGGCTTTGGTCAGACAGATGGAACCTACCACTTCAGAATGACTATCTTGCCACCGACAGACAAGCTGACGATCCTGCTGAACAAAGTCAAGGAGTTCCACCAGAAATTCACACAGCAGTATTCTTAAATTGCCCAATCTCTTCCTCTTATTACCAAGGGAGGAACCCGCCAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156827 lncRNA upstream 6681 20373254 ~ 20375598 (+) False LOC120567833
TU156822 lncRNA upstream 59738 20322288 ~ 20322541 (+) True G116327
TU156817 lncRNA upstream 67008 20314888 ~ 20315271 (+) True G116322
XR_005640611.1 lncRNA upstream 178541 20202125 ~ 20203738 (+) True LOC120567788
TU156672 lncRNA upstream 479460 19902243 ~ 19902819 (+) True G116216
XR_005640642.1 lncRNA downstream 252882 20648605 ~ 20654150 (+) True LOC120567944
TU156975 lncRNA downstream 295896 20691619 ~ 20691985 (+) True G116461
TU156977 lncRNA downstream 297164 20692887 ~ 20693141 (+) True G116463
TU156979 lncRNA downstream 297697 20693420 ~ 20696473 (+) True G116464
TU156980 lncRNA downstream 301181 20696904 ~ 20699209 (+) True G116465
XM_039814900.1 mRNA upstream 2972 20377158 ~ 20379307 (+) True fuz
XM_039814901.1 mRNA upstream 6646 20373227 ~ 20375633 (+) False LOC120567833
XM_039814890.1 mRNA upstream 9134 20366768 ~ 20373145 (+) False ssx2ipa
XM_039816632.1 mRNA downstream 11945 20407668 ~ 20409033 (+) True c1ql3b
XM_039816205.1 mRNA downstream 66068 20461791 ~ 20504276 (+) True egfra
XM_039815168.1 mRNA downstream 111687 20507410 ~ 20523539 (+) True npc1
XM_039815053.1 mRNA downstream 281634 20677357 ~ 20689630 (+) True abhd3
XM_039814883.1 mRNA downstream 345538 20741261 ~ 20779745 (+) True rock1
XR_005640618.1 other upstream 6646 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 865334 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 1363553 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 1708217 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 2027935 18305149 ~ 18354344 (+) True G115729
TU157037 other downstream 486983 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 1475230 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 2212341 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 2245787 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 3281356 23677079 ~ 23685804 (+) True LOC120567964

Expression Profile