RNA id: XM_039814919.1


Basic Information

Item Value
RNA id XM_039814919.1
length 2376
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120567843
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13640522 ~ 13644542 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATATATCATCAACTTCTATTCAGGTAAGCAAAACATTCCAGTGTTTTAAATGatcatctttttgtttttgaattaAGTGCCTTCTGTTAAATGTATTGCTACTCTTTCTAGGTGTCATACTCCACCTCCATGTCAATGCAATGGGAATTTAAAAAATCACCAGCTTCCGTCATCTATTCATTCTCCATCACCTATGCCATTGCCATCACATTTTCAATCATATCATGTTGGAGGGTGGATAATGTGAGGACAAAGGTGTGGGTGGCATCCTGTGGGGTGCTCTGCACAGGTCTGGCAGTCCTGAGCGGTTTTGGTGCGCTGTTGTTGCTGGATCAACCTTTTGTCATGACAGTTGCCTCCTGTCCTTTCATGATATTAGGTATTGGACTGGATGATATGTTTATCATGATCTCTTGCTGGCAGAGGACCCGTGTTCTAGACAGCGTCCCCGCCCGGCTGGCCGACACCTACAAGGATGCTGCCGTCTCTATCTCCATCACCTCCCTGACCGACGCTCTTGCTCTTTTACTGGGCTGCTGCTCGCCCTTTGGTTCAGTCCGGTCCTTCTGCCTGTACGCAGGGATTTCGATTTGCTTCTGCTATCTGTACAGCATCACCTTCCTGGGGGCGTGCATGGCTTTGAACGgacagagagaagcagagaacaAGCACTGGTTCACCTGTGCCAAGATCCCAGAAGACTTACCATCCAGGAATTCAAAAGTCCTTAGTATATGCTGTGTTGGGGGGAGCTACGATCGAATGACAGAAAAGGAGGAAACTGACCCAGTGAGTTACATGTTTGAGCGCTTCTACGGCCCAATGCTGACCCACAAACTGATGAAAGCTTGTGTATTTGTCATTTATGCAGGCTATCTGGCTGTAGGCATCTATGgttgttttatcttaaaggaaGGACTTGATATCAGGAATCTGGCTTTGGATGATTCCTACATCATCGATTACTACAACAATCAAAGGCAGCACTTCTCTGAATATAGCTGTAACGTGATGGTAGCAGTGAAGCGGCCCTTCCCATACTGGGATGAGGATGAACAAAAGCATCTGCTCTCATGCATTTCAGATTTTGAGAGTTTGAACTTTGTCAATGGCACTTTAGCTTGGTTTCTTCCCTTTCTACAATATGCAAACGCATCCGATCTCGATGTAAGTTCTCAACAGGCTTTCCACACATATCTGCGACATTTCTTAGAACTCAAGTCCATGTTCAAACAAGACATCAACTTCACTGCAGACAATACGATTCAGGCCTCTCGCTTTTTTATTCAGACGCTCAACAAAGTCCCAACAAAGGACATGATGATTGGACTCAGGAAAACAGCAGAGGAATGTCCAGTAGAGCTACTGGTGTACCACCCTGCTTTCATCTACTTTGACCAGTACGCTGTCATTATGGACAACACCATTCAAACCATCCTGGTGGCTGTGATCGTGATGCTGGTCGTCTCACTCATCCTGATACCCAATCCTCTTTGCTCCCTGTGGGTGGCCTTTGCAATTTGTTCAGTCATTGTTGGTGTGACAGGGTTCATGGCGCTGTGGGGTGTAAACCTGGACTCCATCTCTATGATCAACCTGCTCATGTGCATTGGTTTTTCTGTAGACTTCTCAGCACACATTTCTTACTCTTTTGTCTCCAGCTCCCAGAGTGATGTGAATAAGAAAACTATGAATGCATTGGCCCATCTAGGCTATCCGATACTGCAAGGAGCACTGTCAACTATTTTAGGAGTGGCGGTGCTGTCCATGTCTGGGAGTTACATCTTTAGGACATTCTTTAAGATTGTGTTTCTTGTGATTACATTTGGGCTGCTCCACGGCTTAGTGTTCATTCCAGTGTTTCTGACTCTGTTTGGAGCCTGTGGGAAGTGGTGTTAAAGTAGGGTTGTCCAGTTTATAAATGACATTTCAAAGGCAAACTGAAATTTGAAttcttcacactttttgtgTCAAGAAATATAATCTACAATGATActgcagttatttatttttttaagataaaataAGTTTTGGACATATTTGTGGAAAACCCAACCTGTTATCTCTGCTACACCGGCGTAACCATAACCTAACCCAAGCCCTAACTTCAACAGCAGAGGGGACGCCCTACAGAAAACACCATTCTAATGGGAGAAAAATAGTGGTGGTTATGTACCGTCTGCCATCTGTCCCATTACAACATTAAAGATTTGGGAGGCTCGTTGTGCTATTGCCTTATACGTAGCCTatatcatggatgtattaagagaggtctatatccttgacgttccacttccggaatTACTCCATTGCTGCCgaatttcactcatttaggccagatatccgttgccttgggcttcctttgtgttggcat

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154129 lncRNA downstream 11855 13625776 ~ 13628667 (-) True G114257
TU154127 lncRNA downstream 15043 13622903 ~ 13625479 (-) True G114256
TU154108 lncRNA downstream 75719 13556604 ~ 13564803 (-) True G114247
TU154088 lncRNA downstream 91056 13533138 ~ 13549466 (-) True LOC120568710
XR_005640644.1 lncRNA upstream 298623 13942055 ~ 13948115 (-) True LOC120567953
TU154347 lncRNA upstream 306439 13949871 ~ 13952153 (-) False tfr1a
TU154346 lncRNA upstream 306535 13949967 ~ 13952153 (-) False tfr1a
TU154384 lncRNA upstream 406062 14049494 ~ 14055523 (-) True G114456
XR_005640651.1 lncRNA upstream 481271 14124703 ~ 14171474 (-) True LOC120568036
XM_039816531.1 mRNA downstream 20824 13595178 ~ 13619698 (-) False LOC120568814
XM_039816529.1 mRNA downstream 20824 13595178 ~ 13619698 (-) False LOC120568814
XM_039816527.1 mRNA downstream 20824 13595178 ~ 13619698 (-) True LOC120568814
XM_039816528.1 mRNA downstream 20825 13595178 ~ 13619697 (-) False LOC120568814
XM_039816530.1 mRNA downstream 28269 13595178 ~ 13612253 (-) False LOC120568814
XM_039814923.1 mRNA upstream 7836 13651268 ~ 13659457 (-) True LOC120567847
XM_039814928.1 mRNA upstream 18106 13661538 ~ 13687808 (-) False LOC120567848
XM_039814925.1 mRNA upstream 18106 13661538 ~ 13687805 (-) False LOC120567848
XM_039814926.1 mRNA upstream 18106 13661538 ~ 13687800 (-) False LOC120567848
XM_039814927.1 mRNA upstream 18106 13661538 ~ 13687526 (-) False LOC120567848
TU153973 other downstream 551959 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 871897 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 1037613 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1422255 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2751570 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 970181 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1152486 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1646754 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1646754 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 1767730 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile