RNA id: XM_039814927.1


Basic Information

Item Value
RNA id XM_039814927.1
length 4203
RNA type mRNA
GC content 0.45
exon number 19
gene id LOC120567848
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13661538 ~ 13687808 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaacttttatttctaaattcaTTCCACAGAACATATGGGCCTATTGGTTTAAATGTACATTATCAGCATCCCTACAGAGAGGTCAGGGTGACACTGAACTGCTACTGCACTGGAGTGAGGAGGATGCTGAGTCGAACAGAACACAGAGGCGTGTGCAGGTTGCTATCATCAGTGATGTCAGGAACAGAGTCTCACACCGACAGGGAGGAGGACTACAGGTTCCTCCACAGCATGTTGATGGAGAAGAAGCTTCACCTGCTCTTTAAGATCCACGAGCGGCTGAAGCGTTTTGAGAAGCGAAGCCCTATCCCGGTCCAAGAGCATGCCGCGAGTCTGGCTTCAGATTTGACGGAGGAGCTGATATACCAAGTCTGGAAAGATGAAGTTGAAGAACTGGTTGCCCTCTTTTCCAAACCCAACTTTAAGGGTCTGCTGTCTGTCCATGACGCTGTAGCTCAGAGAGACTTTGAGCCTGCTCTGCCACCAATACCTGACCATGTACTGGAGGAGGACGAGGATTCTGTCAAAATTGTCAGTCTGGTCAAAACCAAAGACCCCCTGGGGGCAACAATTAAGAGGGATAAATCCACGGGGGCTATTGTTGTGGCGAGGATCATGAGAGGAGGTGCAGCTGATAAAAGCGGCCTGATCCATGAAGGAGATGAGCTGAAAGAGGTGAATGGAGTCTCATTGGAGCACAGGAAGCCAAAGGAAATCCTTACTCTTCTGGCTCGTTCTCAGGGTGAAGTTACATTCAAAATCATTCCTGCTTCCTCCAAGGAAGAAATGTCATCACATAAGAAGCTGTTTATGCGGGCTCTGTTTGACTATGATCCTAACGAGGATCCCACCGTTCCGTGCAAGGATGCAGCGGTAGCATTTGAAAGGGGCGATGTCCTCCAAATTGTCAGCATGGAGGATGACACCTGGTGGCAGGCCCGTCACCTGGGTGACAGCAACACTCGGGCAGGGCTCATCCCCTCGCAGCAGCTCCATGAGAGGAGAGTTTCACTACAGCGACCTAAAGCCCTGTTCAAGCCTCCACGAGTCAAACCGCCAGATGAGAGGGAAGTCCTGGAGGACGTAGACTCCGGAGCTGTAACAGGGATCCACATTGCTGGTTTAAGGAGGAGTTTCCGACTCGGGAGAAAGAGCAGTCTGGCCGGAGAAGCAGCTCGGTCCGGGAGGTGGAGCACGGGGGTACACGGCTCACTTTGTCCACCTACCTACATAGAGGTTATCCCCTACCTCAGAGACCCCAAGGACAGACACCGTCTGGTCGTTCTGGTTGGGCCCAGCGGCGTTGGCGTAAATGAACTGAAGAGGAGGCTCCTGATCTCCGACCCTGACCACTATGGCGTCACTGTGCCGCACACCACACGTGAGAAGAGAAGGCAGGAGAACGAAGGGGTGGATTATCATTTTGTGTCAATTCACACGTTTGAAGAGGATATTCTCAATCATAGGTTTGTAGAATACGGGAGATACAGGGGACACTACTATGGAACAAGTCTAGACTCTGTGCACAGAGTGATGGCTAAGGGCAAGGTGTGCCTCCTCGATGTGCACCCGAATAAAATAAAGCATGTGTACACATCTGAATTCAAACCGTACGTGGTGTTCGTGAAGCCTCCGCCTATACAGGAGCTGCGCCTCACCCGACAGAGAGCTAAATTCACCTGCGCTGAAGAGGACAAGAACTCAGTCAGGAGCTTTTCAGAGGAGGATTTTGAGGACATGATTAACTCGGCCGAAACTATGGAGAGCCAGAGCGGTCACTTGTTTGACAAGGTGATCGTTAACGGAGATATCGCCGTGGCGTTCAGAGAGCTGAAGGCGGCCCTCGAGAAAGTGGAGGAGGCTGAAGTCCATTGGATTCCTGCAGAGTGGATTTGCTCTTCGCCAACAAAAGCGCGGAGAAGTTGTGGTCATTTGGACAGCTGGATTTAAACTTTGAActtacaaagaaacacacacaaaaaaggacCAAAAAAATGTGTCTCAATTATATGTAGTTTACCTTCAACATTGCATGTTtgtcatattttaaatatttttacgTTTGTAAACAAGTCCTGTGATTACCACAGTTTTCCACAGTGTCCCTTAGTGTGTGTATCTAATTAGGCAAACAgaatccatctctctctccctccgtctGACTAAGCGACAGTTTTTTTGTTGGCATTTggctaaaaaaaacatggactcgccggacagaaaagaagaagaaaagaaaaaaaggaaactctGTAGAGCTTGTGGCGGAGTGTAATCCTTCCCTGCCAAGTCGCAAACATCAGCATGTAATTATTCTGACAGCTGCTGCACTTCAATTAACTGTAATGTACACCAGAGAAATATTATTAGTAGCAGTCAGGGAGGCATTGCGCCAACAACATGCTGTACAAAATAGGGGCACAAACGAAAGATAACAGTCAATTAAAGACTGCAAATGAAGAGGAAAGCCCTGTTTAATGGGCGTACATTTCAGAATTGTGTACATATTGTAGATGAGGACTATAGCTGCTTtaacatgtgtgtatgtttcacAATGATTGTACCGTAGACTCTATAGAAACTTGGTTGTTAAAGATTTTAAGGGGTTGTATTTTTAAGCACCCTACACTAGAAATCTACTCCATTGTGGACCATTAATTGTAAAGaagccttttttttaatacacaaaCATATTGAAACAATTATGAATAATTGGCAGAAACTCCCCATTAGTGACACTCCATTAACAAATACTCATATTTGAGCATCGCAGCTGCCTGACGGGTGCAGATGCTACTGTTCTGCTTCACACAAGCTGCTTAATCTTATTATTtttgatggctgcattcctccACATTCATGGTGTTTCCTTCCTCCTTTTGGATGCTGTGTTCAATTGGGTGTGAAGGAGTGTTAATGTGTCTATCATGTCGGGtttgggaggaagagagagcagtGTGATGTGGGGAGACGGTAATGGCTTTCTAGGGACTTGGGCCTTCGCAGACGTACAGAGAGAAAGTTACGACCGCACATAAAAGCTTACTGTAAAAGCACGGTGAGGCTATAGTGGATTAGGCTGCAGGGATAAATAGCACgtaattttattttacaggtATTTATTTGACTTTGGCAGGCCCATTGTCAGCGTTAAATAGGTGAGTGGAGATGCACTCAAAACGTACAAACCAGACTGTCACAACAGTCGCACGTCTGCCAGGTCTTGAAGGCTGTCCTCAGCCAAAGCGTGGCAGTATAACTTCATCACGCCACTGAGAATCTGCAGGCACCCTCTGAGATCATAATGATGCCATTTAAGACACGGAGTGATCCAATGAAAACCCACCGTTTTATATCCACTGCAGCTCCAACTTCAAACATTACACAGCAGTATGATGTCAACTGGTCTCGGATAATTTGGCTCAATCGCGTAACTGTCTATTCGAagtatgtaaaaataaatacgaCTGATGTTAAAACAATATCTCCATCGTTGCATGAAATATTCATAACTTACAACGTGGTAAGGCACATGCTGAAAGTACATGGGAGTTAATTATACAAACCTGAAGTAGGAAGTGGAAAAGGTTTTCAGTTCATGAAATTGAAAGTCATCTACTGATTCTCATTTCCTAATTTTGACACATTAAAGCCAGACTATGTAACTTTCGAAAGGAGAACTAACACAATCTTCCTCTCACTAATGAGCAGTTGAATTCATTAGCAATAAAACGCACCCTTCACCATTTCAATACACTCACACATGGTTTTATTACAAAAGTAAAACAGAAAGTGAACACAACTGACCTGACCAGAAGACACGTTTGTCACCCAAATATGATGTCTTGAAACCTGCAAAGCtataaacacaacattgacagtTTATCACCTTACAGACTTATTATTGTACATTAGTATTAGCAAACAATTTGCATATTCATCACTCTCCCATTTGCTCTGTTTTGGTGTACACCAACTCCTGAGGCAAATATCTGGTTCTTTAgtttaaacagcttttttttccccttagcCATCAGGACTCTGAACTCCTCCCTCTACCCCCCTCCTCACAAGCATAACCCTGATTGTGTGCCGTTGTTGTCCATTTATGTGTTTGTGCTGCAGAGAGTAACATGCTGTACCGAAAACAAATTCCGCCGGCCTTGGTCGTGGGGCTAATAaacaatctatctatctataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154129 lncRNA downstream 32871 13625776 ~ 13628667 (-) True G114257
TU154127 lncRNA downstream 36059 13622903 ~ 13625479 (-) True G114256
TU154108 lncRNA downstream 96735 13556604 ~ 13564803 (-) True G114247
TU154088 lncRNA downstream 112072 13533138 ~ 13549466 (-) True LOC120568710
XR_005640644.1 lncRNA upstream 254529 13942055 ~ 13948115 (-) True LOC120567953
TU154347 lncRNA upstream 262345 13949871 ~ 13952153 (-) False tfr1a
TU154346 lncRNA upstream 262441 13949967 ~ 13952153 (-) False tfr1a
TU154384 lncRNA upstream 361968 14049494 ~ 14055523 (-) True G114456
XR_005640651.1 lncRNA upstream 437177 14124703 ~ 14171474 (-) True LOC120568036
XM_039814923.1 mRNA downstream 2081 13651268 ~ 13659457 (-) True LOC120567847
XM_039814920.1 mRNA downstream 16344 13643360 ~ 13645194 (-) True LOC120567845
XM_039814918.1 mRNA downstream 16996 13640522 ~ 13644542 (-) False LOC120567843
XM_039814919.1 mRNA downstream 18106 13640522 ~ 13643432 (-) True LOC120567843
XM_039816530.1 mRNA downstream 49285 13595178 ~ 13612253 (-) False LOC120568814
XM_039815060.1 mRNA upstream 87456 13774982 ~ 13822764 (-) False LOC120567950
XM_039815059.1 mRNA upstream 87456 13774982 ~ 13822764 (-) True LOC120567950
XM_039815061.1 mRNA upstream 200773 13888299 ~ 13915355 (-) True tnk2b
XM_039815199.1 mRNA upstream 262428 13949954 ~ 13968810 (-) False tfr1a
XM_039815200.1 mRNA upstream 262428 13949954 ~ 13968810 (-) True tfr1a
TU153973 other downstream 572975 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 892913 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 1058629 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1443271 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2772586 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 926087 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1108392 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1602660 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1602660 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 1723636 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile