RNA id: XM_039814931.1


Basic Information

Item Value
RNA id XM_039814931.1
length 3704
RNA type mRNA
GC content 0.49
exon number 17
gene id arhgef18a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18466050 ~ 18479721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTGTGACTTTCTATGTGTCATCCAGATTCCCATTATGCTCTGCTGCAAGGCGATCTTGAGTCCGACCAGCAGAACCTGGAGGCGGAGTCGTGGAACATGGCTGTGGACCAGAACTACCTGAAGGCCCTTAACAAAGAGGCTGTTAAAAGGCAGGACGTCATCTATGAGTTGATCCAGACGGAGATGCACCATGTACGCAACTTAAAAATCCTTCTCCGTGTCTACATGCACGAGTTAAGGCAGTCTTTGCTGATAGAGGAGGCTAGGCTGGAGCGACTCTTTGCTGGGGTGGAATCCCTGCTTACCCTCCACCAGCACTTCCTTAACTGCCTCAAATTGCGCCAAAAGACAAGTCAGGAGGAAGGAAGCCCAAGCAGCTACCAGATCACACATCTGGGGGACATTCTCATTTCTCAGTTTTCAGGACCACTGGGAGAAGGAATGATGGAGTGGTACAGTGTTTTTTGCGGTCATCACAATGAAGCTATCACCTTCTACAAAGAGCAGTTGCAGAATAACAAAAAACTGCAGGTCCTTGCTAGGaaAATAGGTCAGCTGCCCCTGGTGCGAAGGTTGGGAGTTCctgagtgttttctgttggtgaCTCAACGAATCACAAAATATCCCATCCTGGTGGAGCGAATCATACAGAACACTGAAGCTGACACCAACGAGTACAAGTCTCTGGTACAGGGTCTGGCACTGATCAAAGACACCATCAACCAGGTGAACACCCAGGTCAGTGAATATGAGAAAGCCGCCCGTCTTAAAGACATCTGCCTGCGTCTGGAGCCAAAATCTCAGGGCCGGCTGAAGGACGGCCGGCAGCTCCGCAAGGAGGATCTTCTCCAGGGAAACAGGACACTGCTACACGAAGGCACCGTCACCTGGAAGTCCGGTAGACAAAAAGACATCCATGCTGTGCTGCTGTCAGACGTTCTCCTTCTCTTACAAGAGAAAGACCAGAAGCTTGTATTTGCTGCTGTGGATAACAAACCACCAGTGATCTCCCTTCAAAGGCTGATCGTTAGGGAAGTGGCTCACGAGGACAAAGCCATGTACCTCATTTGTGCATGCACTACTAGCATGCCAGAGATGTACGAGATCCACACACGCTCCATAGAGGAACGCATCACGTGGACGAGGCTGATACGGGAAGCTGTGAACCGCTATCCTGAAGAAGAACAGTACCGTGAACTGACTGCGAAACTGCAACAATTTCAAGATATTCTAAAGGTAAGGGATGACCAGATAAAGCAAATGCTGACAGAGAAGCAGCAGATCTTTGCTGCTCTCTACGAGACGACGACGGAGCAGGAAACCCCCCACAAAGGGCTGCTGCTCCGAGGAGATGCCACTGacctccagcagggggcgacactgCTCAGAGGAGCCATCGATGAGGCGGAAAACCTGCAGACCTTGCTCTTCTCATGGATAAGAGACCCAAACCTTTTGGATGAGGGTAAGATGCAGGGGGGGCTCGGGAGGGCCCAGACCTTTGGCGTGGCTGATGGTAACTCAGGTGCAAACTCCATGAAAAATGGAGATGCAGGTGGCAGCGAGGGCAGTCCCTCCACTAGGGACCCTCAGCTCCAGGAAAGTTACAGCTCTGAGAGCCTGGAACAGTTGGCTGATGACGACACACGGACGCCAGACTGCAGTTTAACCTCCGCTTATTTCCCTGAGGCGGAGGTGTGTGACAGGGTGATACTGCTCGCACAGAGGCTGTACAGCTTGGAAGCAATCATCACCCAGCAGGACAGCCAGATTGAGCTGCAGCATGCTTTTCAGACAAAGAGCAAGCAGCCCGCTCGTCATTACAGCAGTGTGCTGCTCGAGCAGGAGAAGCAGCGCAACTTGGAGAAGCAAAAGGAGGAACTTGCCAGCTTGCACAAGCTGCAGGCCCAGTTTCAAGAGGAGCAGCAGCGCTGGGAGAAGGACAGGGAGCGGCAGAGGATACAGATTGAGACTCTGGAGGCTCGGCTGCAACAGAGGGAGGAGGACTGCCGAGAGTGGGAGGAGAAGCTCAAGGAAGAGAAGGCTGAGCTGGAGAGGTTGAAGGACGACTATCAGCAAGACCTGGAGAGGCTGAGGGAATCCACACAATCTGTAGACAAGAACAAGGAGCGTCTGAATCAGGAGAGGGAGCGCCTAGAGCAGCTGCAGGAGAAAATAAAGAAGTACATCCCAGTACACGGCAGCTATGATGATCCTACACAACGCTTGCCTCTTTCCAGTTACCAGTCGTTCAGGGGAAGCATAGTGAACGGAGGTGGGACCTTGGATCAAAAGCACCACATCTTGCCCACCAACTCCATGGAAAGTCCTCCAAAGGTTCCACCGCGCAGGGAGAGCATCAATCCTCTGCCAGCCAAGCCCGAGCTGCCAGTCCACCTGATCAGCACCACCAACCAGGTGCACAAACCTGCCGCCGTGCAACAGAAGATCCCCACCAAGCTGGCTGCTCAGTCCAAGGGAAAGGAGAAAGGTTTCAAGAAGAAAGGGTCCCACCAGAGAACGCACAGTGCAGCTGGTATAGACGTGAACCAGGTGCTGCCCATCCGAGTGACCGGCAAAGAAGGAGGCAGTCTGAGAGCCAAAAGGAACGGCAGTCCCCAAAGAATCTACCTGTCAGGTGCCTTCAACCCACCAGGATCTATGCGCAGTATAAAAACATCTCAGTCCTTTAGCACATACAAGAGGAGCAGCAACGAGTCTCCACCACCGCCAGCGCCTCCTCCttttcccaaagatgttctCAAAACAAGCATGCCGCCTCCTCCTGTTCCCAAAACAAGCAAAGAGAaggaaatattcctttaatccTAAACCTGACTGGAGTTCGGATGAGGCCTTGTCCATCATAAAGACTTTTAGACATGGAAAGACTGATGGAGCTTTTAAAACGGTCCTGGGTGGCGCTGAGCCCCCCGGATGCAGCGGCGGTGTCCTCGCAAAATAGGCAGCAGAGATAGCTGAAGGGGAGAACGCTGGATGTCAGGCTATAttccagcaatgtacatccgttgagccagactacaTTCAGATTAGCTGAAcataaaaaagtaaagaaatgcTGATGGACATGCTTTAGAAAGATATGTACATTTGTGTTAGTGgttcaaaaaatgtaaaaagcttTTTGCACATTGGGAAAGATATTTTAAATTAAGATGTTGCGAAACCTTTCAATgccaaagttattttttttatcatttttatttttaaatgaaagtaggTAGTCTTTAACAATTAGCACTCATGTCTTAACTTCTAAGctttctttttaatgtaatgAATGATAAATACGGTATGAGGAAGCTGTAGATTTACCAACTTTTACATCGGTTTTAAATCTGAGGTGCCAAGCACAAACGTTTTATTTCAGAATGAATCGGAGAACTGTGGAATTTATACTGTGGTCCTGCTCCTCAGTATGTCTTATAATTAAATCATAAATCAATAGGGTATGTGGAAGAATCTACAAGTTGTTTGTAAATACTATGGGCTGTTTTGTGCAATTCCTGACTGGAGACAGTGAGAGTCTACGACTCCGTATCAGCAGGGTTGTTTTGAGTTTACAACCAGGCAGCTGCTGAAAGCATTTATGAGAATGTAAGAGAAATATTTCCAAGTGACATTCCCTGTTCAATAATGCTCTAGCATAATTACACAATAAACATTATGTTGATGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640622.1 lncRNA upstream 600 18458181 ~ 18465450 (+) False LOC120567854
TU156137 lncRNA upstream 624 18458240 ~ 18465426 (+) True LOC120567854
TU156136 lncRNA upstream 689 18458240 ~ 18465361 (+) False LOC120567854
TU156130 lncRNA upstream 10430 18454389 ~ 18455620 (+) True G115781
TU156133 lncRNA upstream 11263 18454033 ~ 18454787 (+) False G115781
TU156146 lncRNA downstream 8810 18488531 ~ 18490186 (+) True G115793
TU156184 lncRNA downstream 121037 18600758 ~ 18602260 (+) False skila
TU156191 lncRNA downstream 152995 18632716 ~ 18646383 (+) True G115826
TU156224 lncRNA downstream 169053 18648774 ~ 18649804 (+) True G115856
TU156234 lncRNA downstream 203993 18683714 ~ 18684253 (+) False G115862
XM_039815220.1 mRNA upstream 12085 18394984 ~ 18453965 (+) True insra
XM_039815899.1 mRNA upstream 81079 18360882 ~ 18384971 (+) True mfsd14a2
XM_039815869.1 mRNA upstream 105820 18328259 ~ 18360230 (+) True myo9b
XM_039815868.1 mRNA upstream 105820 18328259 ~ 18360230 (+) False myo9b
XM_039815870.1 mRNA upstream 105820 18328260 ~ 18360230 (+) False myo9b
XM_039814934.1 mRNA downstream 16970 18496691 ~ 18505667 (+) True dapk3
XM_039816544.1 mRNA downstream 42248 18521969 ~ 18556360 (+) True prkci
XM_039815518.1 mRNA downstream 86912 18566633 ~ 18602263 (+) True skila
XM_039815320.1 mRNA downstream 129492 18609213 ~ 18624575 (+) False nadkb
XM_039815322.1 mRNA downstream 129742 18609463 ~ 18624575 (+) False nadkb
TU156065 other upstream 111706 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 436155 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1025587 17407491 ~ 17440463 (+) False LOC120568596
XR_005640725.1 other upstream 1939621 16439025 ~ 16526429 (+) False LOC120568419
TU156233 other downstream 192841 18672562 ~ 18674062 (+) False LOC120568691
TU156400 other downstream 537337 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 1037132 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1893514 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 2402985 20882706 ~ 20915288 (+) False LOC120568904

Expression Profile